Variant report

Variant	rs10516044
Chromosome Location	chr5:167604236-167604237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1013017	0.86[AFR][1000 genomes]
rs12186655	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13153393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180204	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17550586	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17632217	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17663412	0.86[AFR][1000 genomes]
rs34373271	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34640925	0.84[ASN][1000 genomes]
rs34962507	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34978256	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35359043	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35982759	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6885116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167589000-167605400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:167592400-167626000	Weak transcription	HSMM	muscle
3	chr5:167593200-167607800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167596800-167608000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167599400-167606200	Weak transcription	Aorta	Aorta
6	chr5:167599800-167605200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:167600000-167604600	Weak transcription	Fetal Heart	heart
8	chr5:167600200-167604600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:167600200-167604600	Weak transcription	Brain Germinal Matrix	brain
10	chr5:167600200-167604800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:167600200-167605000	Weak transcription	Fetal Stomach	stomach
12	chr5:167600200-167613800	Weak transcription	Right Atrium	heart
13	chr5:167600600-167605000	Weak transcription	Left Ventricle	heart
14	chr5:167601200-167605800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:167601200-167606000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:167601200-167612000	Weak transcription	NHEK	skin
17	chr5:167601600-167604800	Weak transcription	Fetal Brain Male	brain
18	chr5:167601800-167604600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:167601800-167607400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:167602000-167605000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:167602200-167606200	Weak transcription	Right Ventricle	heart
22	chr5:167602800-167605000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:167603200-167607000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:167603400-167604600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:167603600-167605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:167603600-167605800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:167603600-167617200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:167604000-167606400	Enhancers	Fetal Muscle Leg	muscle
29	chr5:167604200-167604400	Enhancers	HSMMtube	muscle
30	chr5:167604200-167604600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:167604200-167605800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:167604200-167606800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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