Variant report

Variant	rs34640925
Chromosome Location	chr5:167625571-167625572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10516044	0.84[ASN][1000 genomes]
rs12186655	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13153393	0.84[ASN][1000 genomes]
rs13180204	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550586	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17632217	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34373271	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34962507	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34978256	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35359043	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35982759	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6885116	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600255	chr5:167622534-167651603	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv600256	chr5:167622914-167643545	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167592400-167626000	Weak transcription	HSMM	muscle
2	chr5:167606600-167626800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167608600-167631800	Weak transcription	NH-A	brain
4	chr5:167615800-167633800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
6	chr5:167617000-167628200	Strong transcription	NHEK	skin
7	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
8	chr5:167620600-167626800	Weak transcription	Brain Angular Gyrus	brain
9	chr5:167620800-167634200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167620800-167636400	Weak transcription	HSMMtube	muscle
11	chr5:167621200-167636600	Weak transcription	Brain Anterior Caudate	brain
12	chr5:167621400-167626800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167621400-167636600	Weak transcription	Fetal Lung	lung
14	chr5:167621400-167657600	Weak transcription	Fetal Brain Female	brain
15	chr5:167621800-167629000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:167621800-167646400	Weak transcription	Brain Germinal Matrix	brain
17	chr5:167622200-167628000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:167622200-167636200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:167622200-167636400	Weak transcription	Fetal Brain Male	brain
20	chr5:167622400-167625600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:167622600-167636600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:167622800-167625600	Weak transcription	Left Ventricle	heart
23	chr5:167622800-167629800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:167622800-167634000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:167623000-167634200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:167624000-167631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:167624000-167636600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:167624200-167625600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:167624600-167634400	Weak transcription	HMEC	breast
30	chr5:167624600-167646600	Weak transcription	Liver	Liver
31	chr5:167624800-167636800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr5:167625000-167628200	Strong transcription	Right Ventricle	heart

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