Variant report

Variant	rs10130680
Chromosome Location	chr14:42354477-42354478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:42353303..42355552-chr14:42355900..42358356,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10133646	0.84[JPT][hapmap]
rs10142438	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10142615	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1022855	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10431667	0.83[ASN][1000 genomes]
rs11625940	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs11846415	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11848944	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17112380	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17112395	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1957869	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957874	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2147112	0.85[ASN][1000 genomes]
rs2181736	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2224838	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4243699	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4904978	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55681342	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6572117	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs721222	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7359052	0.85[JPT][hapmap]
rs737003	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs8020905	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8022872	0.81[EUR][1000 genomes]
rs988740	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs988741	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs988805	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42354400-42362600	Weak transcription	Fetal Muscle Leg	muscle

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