Variant report
| Variant | rs55681342 |
|---|---|
| Chromosome Location | chr14:42397569-42397570 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:42392565..42394180-chr14:42396947..42398541,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10130680 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10133646 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10142438 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10142615 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10431619 | 0.80[EUR][1000 genomes] |
| rs10431620 | 0.84[AMR][1000 genomes] |
| rs10431621 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11157254 | 0.80[AMR][1000 genomes] |
| rs11846415 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11848944 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17112380 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17112395 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1957869 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2181736 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2209228 | 0.84[AMR][1000 genomes] |
| rs4904978 | 0.81[EUR][1000 genomes] |
| rs6572117 | 0.82[EUR][1000 genomes] |
| rs8020905 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8022872 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs988740 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs988741 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs988805 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv901740 | chr14:42386859-42477256 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv977407 | chr14:42391600-42398137 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:42397000-42397600 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
