Variant report

Variant	rs10131417
Chromosome Location	chr14:69463711-69463712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11846999	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847083	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850741	0.98[EUR][1000 genomes]
rs17758097	0.97[EUR][1000 genomes]
rs17835991	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2284906	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58291960	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67356344	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144924	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs72718210	0.85[EUR][1000 genomes]
rs72718212	0.90[EUR][1000 genomes]
rs72718216	0.93[EUR][1000 genomes]
rs72718217	0.93[EUR][1000 genomes]
rs72718261	0.80[EUR][1000 genomes]
rs730635	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69455600-69465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:69456000-69464400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69456000-69471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69462800-69470800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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