Variant report

Variant	rs7144924
Chromosome Location	chr14:69472159-69472160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69443805..69447770-chr14:69468960..69472482,4	MCF-7	breast:
2	chr14:69378536..69380644-chr14:69471765..69473776,2	MCF-7	breast:
3	chr14:69390106..69392207-chr14:69470641..69472372,2	MCF-7	breast:
4	chr14:69468155..69470465-chr14:69471186..69473810,2	MCF-7	breast:
5	chr14:69471670..69474001-chr14:69555320..69558312,2	MCF-7	breast:
6	chr14:69472049..69474054-chr14:69481057..69482617,2	MCF-7	breast:
7	chr14:69458865..69460380-chr14:69470355..69472352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131417	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11846999	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11847083	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11850741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17758097	0.93[EUR][1000 genomes]
rs17835991	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2284906	0.97[EUR][1000 genomes]
rs58291960	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67356344	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72718210	0.81[EUR][1000 genomes]
rs72718212	0.86[EUR][1000 genomes]
rs72718216	0.90[EUR][1000 genomes]
rs72718217	0.90[EUR][1000 genomes]
rs72718261	0.83[EUR][1000 genomes]
rs730635	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69469800-69473000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69470800-69473000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:69470800-69473200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr14:69471000-69472800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:69471000-69473200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:69471000-69473400	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:69471000-69473600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:69471200-69472800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:69471200-69473000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:69471200-69473000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:69471200-69473000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:69471200-69473000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:69471200-69473000	Enhancers	Stomach Smooth Muscle	stomach
14	chr14:69471200-69473000	Enhancers	NHLF	lung
15	chr14:69471200-69473200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:69471200-69473200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:69471200-69473200	Enhancers	NHDF-Ad	bronchial
18	chr14:69471200-69473800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69471200-69473800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:69471400-69472400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:69471400-69472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:69471400-69472800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:69471400-69472800	Enhancers	Esophagus	oesophagus
24	chr14:69471400-69472800	Enhancers	Fetal Muscle Leg	muscle
25	chr14:69471400-69473000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:69471400-69473200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:69471400-69473200	Enhancers	Aorta	Aorta
28	chr14:69471400-69473200	Enhancers	HUVEC	blood vessel
29	chr14:69471600-69472200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:69471600-69472200	Enhancers	A549	lung
31	chr14:69471600-69472200	Enhancers	Hela-S3	cervix
32	chr14:69471600-69472400	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr14:69471600-69472600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr14:69471600-69472600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:69471600-69472600	Flanking Active TSS	NH-A	brain
36	chr14:69471600-69472800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr14:69471600-69472800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr14:69471600-69472800	Enhancers	Brain Germinal Matrix	brain
39	chr14:69471600-69472800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr14:69471600-69473000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr14:69471600-69473000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr14:69471600-69473000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:69471600-69473000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:69471600-69473000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr14:69471600-69473000	Enhancers	Rectal Smooth Muscle	rectum
46	chr14:69471600-69473000	Enhancers	Right Atrium	heart
47	chr14:69471600-69473000	Bivalent Enhancer	HepG2	liver
48	chr14:69471600-69473000	Enhancers	HSMM	muscle
49	chr14:69471600-69473000	Enhancers	HSMMtube	muscle
50	chr14:69471600-69473400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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