Variant report

Variant	rs10131764
Chromosome Location	chr14:105896857-105896858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105890219..105897355-chr14:105898483..105904459,8	MCF-7	breast:
2	chr14:105890144..105891833-chr14:105895288..105897089,2	MCF-7	breast:
3	chr14:105895888..105900814-chr14:105938941..105942915,4	MCF-7	breast:
4	chr14:105896308..105902198-chr14:105902460..105906815,7	MCF-7	breast:
5	chr14:105887282..105889637-chr14:105895992..105898524,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182979	Chromatin interaction
ENSG00000182809	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10144583	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10873557	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983339	0.85[YRI][hapmap]
rs4983617	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4983618	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4983619	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60264385	0.85[AMR][1000 genomes]
rs6576091	0.93[AFR][1000 genomes]
rs73361079	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105887200-105897800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:105887600-105919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:105888200-105900400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:105888400-105897200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:105888400-105899200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:105888400-105904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:105888600-105914800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:105888600-105918400	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:105888800-105908600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:105889200-105897000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:105889200-105903600	Weak transcription	Stomach Mucosa	stomach
12	chr14:105889200-105904400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:105889200-105905400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:105889200-105905400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:105889400-105901600	Weak transcription	Fetal Brain Male	brain
18	chr14:105889400-105905200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:105889400-105908600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr14:105889400-105914400	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:105889400-105914800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:105889400-105916400	Weak transcription	Brain Anterior Caudate	brain
23	chr14:105889600-105897600	Strong transcription	Dnd41	blood
24	chr14:105889600-105900000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr14:105889600-105905600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:105890400-105916200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:105891600-105904800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:105891800-105899800	ZNF genes & repeats	Fetal Stomach	stomach
29	chr14:105892600-105898000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:105893400-105899000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:105893400-105908600	Weak transcription	Colonic Mucosa	Colon
32	chr14:105893600-105897000	Weak transcription	Right Ventricle	heart
33	chr14:105893600-105899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:105893600-105908400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:105893600-105908600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr14:105893800-105897200	Weak transcription	Liver	Liver
37	chr14:105893800-105899200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:105893800-105899600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:105893800-105899600	Weak transcription	Gastric	stomach
40	chr14:105893800-105902800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr14:105893800-105902800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr14:105893800-105903200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:105893800-105903200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:105894000-105903400	Weak transcription	Placenta	Placenta
45	chr14:105894000-105905200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr14:105894200-105897200	Strong transcription	Fetal Intestine Small	intestine
47	chr14:105895000-105897000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:105895600-105903400	Weak transcription	Spleen	Spleen
49	chr14:105895800-105897200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:105896200-105897400	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links