Variant report

Variant	rs6576091
Chromosome Location	chr14:105895081-105895082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105865501..105867902-chr14:105893531..105895602,2	K562	blood:
2	chr14:105890219..105897355-chr14:105898483..105904459,8	MCF-7	breast:
3	chr14:105864274..105867902-chr14:105893059..105895602,3	K562	blood:

Variant related genes	Relation type
ENSG00000226174	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10131764	0.93[AFR][1000 genomes]
rs10144583	0.91[AFR][1000 genomes]
rs10873557	0.94[AFR][1000 genomes]
rs4983617	0.93[AFR][1000 genomes]
rs4983618	0.90[AFR][1000 genomes]
rs4983619	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105887200-105897800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:105887600-105919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:105887800-105896600	Weak transcription	HSMMtube	muscle
4	chr14:105888000-105896800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:105888200-105896400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:105888200-105896400	Weak transcription	NHDF-Ad	bronchial
7	chr14:105888200-105900400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:105888400-105896800	Weak transcription	NH-A	brain
9	chr14:105888400-105897200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:105888400-105899200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:105888400-105904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:105888600-105914800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:105888600-105918400	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:105888800-105896800	Weak transcription	Primary B cells from cord blood	blood
15	chr14:105888800-105908600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:105889200-105895400	Weak transcription	HUVEC	blood vessel
17	chr14:105889200-105896200	Weak transcription	Right Atrium	heart
18	chr14:105889200-105896400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:105889200-105896600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:105889200-105896600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:105889200-105897000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:105889200-105903600	Weak transcription	Stomach Mucosa	stomach
23	chr14:105889200-105904400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:105889200-105905400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:105889200-105905400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:105889400-105895400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:105889400-105895600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:105889400-105896400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:105889400-105896400	Weak transcription	HMEC	breast
32	chr14:105889400-105896600	Weak transcription	K562	blood
33	chr14:105889400-105901600	Weak transcription	Fetal Brain Male	brain
34	chr14:105889400-105905200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr14:105889400-105908600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:105889400-105914400	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:105889400-105914800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:105889400-105916400	Weak transcription	Brain Anterior Caudate	brain
39	chr14:105889600-105896000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:105889600-105896400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr14:105889600-105897600	Strong transcription	Dnd41	blood
42	chr14:105889600-105900000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:105889600-105905600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:105890400-105916200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr14:105890600-105896400	Weak transcription	Left Ventricle	heart
46	chr14:105891400-105895600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr14:105891600-105895400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:105891600-105904800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:105891800-105895600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr14:105891800-105899800	ZNF genes & repeats	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links