Variant report

Variant	rs10132394
Chromosome Location	chr14:70705927-70705928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10083311	1.00[EUR][1000 genomes]
rs10083458	1.00[EUR][1000 genomes]
rs10130186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130187	1.00[EUR][1000 genomes]
rs10130290	1.00[EUR][1000 genomes]
rs17108057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332268	1.00[EUR][1000 genomes]
rs28380137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28437734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28545330	1.00[EUR][1000 genomes]
rs36045882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55947567	1.00[EUR][1000 genomes]
rs57151016	1.00[EUR][1000 genomes]
rs57439677	1.00[EUR][1000 genomes]
rs58673738	1.00[EUR][1000 genomes]
rs59929427	1.00[EUR][1000 genomes]
rs6573926	1.00[EUR][1000 genomes]
rs73290343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73290384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73290386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8014629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9671437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv983840	chr14:70696676-70714926	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70697400-70719400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:70701800-70721200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70704400-70706400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:70705000-70706000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70705600-70706400	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links