Variant report
| Variant | rs28437734 |
|---|---|
| Chromosome Location | chr14:70744561-70744562 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10083311 | 1.00[EUR][1000 genomes] |
| rs10083458 | 1.00[EUR][1000 genomes] |
| rs10130186 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10130187 | 1.00[EUR][1000 genomes] |
| rs10130290 | 1.00[EUR][1000 genomes] |
| rs10132394 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17108057 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2332268 | 1.00[EUR][1000 genomes] |
| rs28380137 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28545330 | 1.00[EUR][1000 genomes] |
| rs28617626 | 0.89[AFR][1000 genomes] |
| rs28696763 | 0.91[AFR][1000 genomes] |
| rs36045882 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55947567 | 1.00[EUR][1000 genomes] |
| rs57151016 | 1.00[EUR][1000 genomes] |
| rs57439677 | 1.00[EUR][1000 genomes] |
| rs58673738 | 1.00[EUR][1000 genomes] |
| rs59929427 | 1.00[EUR][1000 genomes] |
| rs61734856 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6573926 | 1.00[EUR][1000 genomes] |
| rs73290343 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73290384 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73290386 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73291971 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73291974 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73291978 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73292002 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8008053 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8010913 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8014629 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9671437 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902075 | chr14:70612618-70919016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70735800-70749200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr14:70744200-70746800 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
