Variant report

Variant	rs10133278
Chromosome Location	chr14:65638277-65638278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65633532..65639308-chr14:65876570..65881222,11	MCF-7	breast:
2	chr14:65631339..65634911-chr14:65637124..65640936,4	MCF-7	breast:
3	chr14:65635781..65638807-chr14:65641309..65644199,4	MCF-7	breast:
4	chr14:65635954..65639205-chr14:65640166..65643842,3	MCF-7	breast:
5	chr14:65637279..65639473-chr14:65641141..65644140,2	K562	blood:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133408	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10144241	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158583	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11850650	0.90[ASN][1000 genomes]
rs12147743	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12889637	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35299636	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36066968	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56115093	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61989767	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141780	0.83[JPT][hapmap]
rs7158173	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7158687	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8011108	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8011246	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65637200-65638400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr14:65637200-65638400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:65637400-65638400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:65638000-65638400	Enhancers	HepG2	liver
5	chr14:65638000-65640400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:65638000-65640600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65638000-65640600	Weak transcription	Ovary	ovary
8	chr14:65638000-65640800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65638000-65641200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:65638000-65641200	Weak transcription	Right Ventricle	heart
11	chr14:65638000-65646600	Weak transcription	Pancreas	Pancrea
12	chr14:65638000-65646600	Weak transcription	Right Atrium	heart
13	chr14:65638200-65638400	Enhancers	Primary B cells from cord blood	blood
14	chr14:65638200-65638400	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:65638200-65638400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr14:65638200-65638400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:65638200-65638400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:65638200-65638400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:65638200-65638400	Enhancers	Brain Hippocampus Middle	brain
20	chr14:65638200-65638400	Enhancers	GM12878-XiMat	blood
21	chr14:65638200-65638400	Enhancers	HUVEC	blood vessel
22	chr14:65638200-65640200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:65638200-65640400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:65638200-65640400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr14:65638200-65640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:65638200-65640400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:65638200-65640400	Weak transcription	Brain Angular Gyrus	brain
28	chr14:65638200-65640400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr14:65638200-65640400	Weak transcription	Brain Substantia Nigra	brain
30	chr14:65638200-65640400	Weak transcription	Fetal Brain Male	brain
31	chr14:65638200-65640400	Weak transcription	NHLF	lung
32	chr14:65638200-65640600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:65638200-65640600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:65638200-65640600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:65638200-65640600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr14:65638200-65640600	Weak transcription	Brain Anterior Caudate	brain
37	chr14:65638200-65640800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:65638200-65640800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:65638200-65640800	Weak transcription	NH-A	brain
40	chr14:65638200-65640800	Weak transcription	NHDF-Ad	bronchial
41	chr14:65638200-65641000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:65638200-65641000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:65638200-65641000	Weak transcription	Fetal Brain Female	brain
44	chr14:65638200-65641000	Weak transcription	Fetal Intestine Small	intestine
45	chr14:65638200-65644400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr14:65638200-65645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:65638200-65646400	Weak transcription	A549	lung

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