Variant report

Variant	rs36066968
Chromosome Location	chr14:65650954-65650955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65649804..65652587-chr14:65878283..65880596,2	MCF-7	breast:
2	chr14:65646749..65648521-chr14:65650212..65652382,2	K562	blood:
3	chr14:65649526..65652091-chr14:65652657..65655618,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10133278	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10873187	0.80[ASN][1000 genomes]
rs11158582	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158583	0.82[EUR][1000 genomes]
rs11851179	0.81[ASN][1000 genomes]
rs12147743	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437124	0.81[ASN][1000 genomes]
rs12889637	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35299636	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36120512	0.81[ASN][1000 genomes]
rs56115093	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56270923	0.84[AFR][1000 genomes]
rs61291180	0.81[ASN][1000 genomes]
rs61989767	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158173	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158687	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8011108	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8011246	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65641600-65653400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:65641600-65653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65641800-65653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:65647600-65651000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:65647600-65651000	Weak transcription	Fetal Heart	heart
7	chr14:65647800-65659800	Weak transcription	Fetal Intestine Large	intestine
8	chr14:65648200-65652400	Weak transcription	Pancreas	Pancrea
9	chr14:65650000-65653200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:65650600-65651000	Enhancers	HepG2	liver
11	chr14:65650600-65651200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:65650600-65651200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:65650600-65651200	Enhancers	GM12878-XiMat	blood
14	chr14:65650600-65651400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:65650600-65651400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:65650600-65651400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:65650600-65651400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:65650600-65651400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr14:65650600-65651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:65650600-65651400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:65650600-65651400	Enhancers	A549	lung
22	chr14:65650600-65651400	Enhancers	Osteobl	bone
23	chr14:65650600-65651600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:65650600-65651600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:65650600-65651600	Enhancers	HMEC	breast
26	chr14:65650600-65651600	Enhancers	NH-A	brain
27	chr14:65650600-65651800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:65650600-65651800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:65650600-65651800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:65650600-65651800	Enhancers	NHEK	skin
31	chr14:65650800-65651200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr14:65650800-65651200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr14:65650800-65651200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:65650800-65651200	Enhancers	NHDF-Ad	bronchial
35	chr14:65650800-65651400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:65650800-65651400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr14:65650800-65651400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:65650800-65651600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:65650800-65651600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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