Variant report

Variant	rs12437124
Chromosome Location	chr14:65624321-65624322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65619490..65621692-chr14:65623555..65626108,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10129544	0.80[EUR][1000 genomes]
rs10873187	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158582	0.91[ASN][1000 genomes]
rs11851179	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12147743	0.83[ASN][1000 genomes]
rs12889637	0.89[ASN][1000 genomes]
rs35299636	0.92[ASN][1000 genomes]
rs36066968	0.81[ASN][1000 genomes]
rs36120512	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115093	0.83[ASN][1000 genomes]
rs56270923	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61291180	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989767	0.83[ASN][1000 genomes]
rs7158173	0.83[ASN][1000 genomes]
rs7158687	0.83[ASN][1000 genomes]
rs8011108	0.83[ASN][1000 genomes]
rs8011246	0.83[ASN][1000 genomes]
rs9744014	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65616400-65626200	Weak transcription	Spleen	Spleen
2	chr14:65620000-65625800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:65622800-65624400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr14:65623200-65624400	Enhancers	HMEC	breast
5	chr14:65623200-65625200	Enhancers	Fetal Muscle Trunk	muscle
6	chr14:65623200-65626000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:65623400-65624600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:65623400-65624600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr14:65623600-65625000	Weak transcription	Gastric	stomach
10	chr14:65623800-65624600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:65623800-65625000	Weak transcription	Lung	lung
12	chr14:65623800-65625200	Weak transcription	NHDF-Ad	bronchial
13	chr14:65623800-65625400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:65623800-65625600	Weak transcription	HSMMtube	muscle
15	chr14:65623800-65626200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:65623800-65626200	Weak transcription	Esophagus	oesophagus
17	chr14:65624000-65624400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:65624000-65624400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr14:65624000-65624400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr14:65624000-65624400	Enhancers	Adipose Nuclei	Adipose
21	chr14:65624000-65624400	Enhancers	Osteobl	bone
22	chr14:65624000-65624600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:65624000-65624600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr14:65624000-65625000	Weak transcription	Stomach Mucosa	stomach
25	chr14:65624000-65625200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:65624000-65625200	Weak transcription	HSMM	muscle
27	chr14:65624000-65625600	Weak transcription	Hela-S3	cervix
28	chr14:65624000-65625800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:65624000-65625800	Enhancers	GM12878-XiMat	blood
30	chr14:65624000-65626200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:65624000-65637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:65624000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:65624200-65625000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links