Variant report

Variant	rs61291180
Chromosome Location	chr14:65622841-65622842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10129544	0.82[EUR][1000 genomes]
rs10873187	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158582	0.91[ASN][1000 genomes]
rs11851179	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12147743	0.83[ASN][1000 genomes]
rs12437124	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889637	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35299636	0.92[ASN][1000 genomes]
rs36066968	0.81[ASN][1000 genomes]
rs36120512	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115093	0.83[ASN][1000 genomes]
rs56270923	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61989767	0.83[ASN][1000 genomes]
rs7158173	0.83[ASN][1000 genomes]
rs7158687	0.83[ASN][1000 genomes]
rs8011108	0.83[ASN][1000 genomes]
rs8011246	0.83[ASN][1000 genomes]
rs9744014	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65610200-65623400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65615400-65623200	Weak transcription	Gastric	stomach
3	chr14:65616400-65626200	Weak transcription	Spleen	Spleen
4	chr14:65618600-65623400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:65618600-65623400	Weak transcription	Fetal Lung	lung
6	chr14:65619000-65623600	Weak transcription	Hela-S3	cervix
7	chr14:65619600-65623200	Weak transcription	Placenta	Placenta
8	chr14:65620000-65623200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:65620000-65625800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:65620200-65623000	Weak transcription	Adipose Nuclei	Adipose
11	chr14:65620200-65623200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:65620200-65623200	Weak transcription	HSMMtube	muscle
13	chr14:65620200-65623200	Weak transcription	Osteobl	bone
14	chr14:65620200-65623600	Weak transcription	Fetal Stomach	stomach
15	chr14:65620800-65623200	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:65621000-65623200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr14:65621800-65623200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:65622400-65623200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr14:65622600-65623200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:65622600-65624000	Flanking Active TSS	GM12878-XiMat	blood
21	chr14:65622800-65623200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:65622800-65624000	Enhancers	Primary B cells from peripheral blood	blood
23	chr14:65622800-65624400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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