Variant report

Variant	rs10133423
Chromosome Location	chr14:78668710-78668711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10129486	1.00[EUR][1000 genomes]
rs10137760	1.00[EUR][1000 genomes]
rs10141650	0.89[AFR][1000 genomes]
rs10151566	1.00[AMR][1000 genomes]
rs11850806	0.92[AFR][1000 genomes]
rs61636440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74063974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78665000-78678000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78665400-78670000	Enhancers	Fetal Thymus	thymus
3	chr14:78666000-78670200	Enhancers	Thymus	Thymus
4	chr14:78666800-78669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:78666800-78669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:78667200-78670200	Enhancers	Primary hematopoietic stem cells	blood
7	chr14:78667400-78670200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:78667600-78669600	Enhancers	Primary B cells from peripheral blood	blood
9	chr14:78667600-78669800	Enhancers	Primary B cells from cord blood	blood
10	chr14:78667600-78670200	Enhancers	Dnd41	blood
11	chr14:78667800-78668800	Weak transcription	Brain Germinal Matrix	brain
12	chr14:78667800-78669000	Enhancers	Spleen	Spleen
13	chr14:78667800-78669600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:78667800-78670200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:78668000-78668800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr14:78668000-78669000	Enhancers	GM12878-XiMat	blood
17	chr14:78668000-78670200	Enhancers	Primary T cells from cord blood	blood
18	chr14:78668200-78669200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr14:78668400-78668800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
20	chr14:78668400-78669200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr14:78668400-78669800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:78668400-78670600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:78668600-78670000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:78668600-78670000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:78668600-78670600	Enhancers	NHEK	skin

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