Variant report

Variant	rs10134212
Chromosome Location	chr14:31844402-31844403
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10130574	0.95[EUR][1000 genomes]
rs10132752	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10137900	0.84[AFR][1000 genomes]
rs10143519	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];1.00[MKK][hapmap];0.89[ASN][1000 genomes]
rs10145767	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10147468	1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10149123	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11156668	0.95[EUR][1000 genomes]
rs11844036	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11850326	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12323409	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];1.00[MKK][hapmap];0.94[ASN][1000 genomes]
rs12586712	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12885363	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12886557	0.95[EUR][1000 genomes]
rs17097814	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2094131	0.95[EUR][1000 genomes]
rs2182256	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2378851	0.86[EUR][1000 genomes]
rs2378852	1.00[EUR][1000 genomes]
rs2378853	0.91[EUR][1000 genomes]
rs2378857	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs28396248	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28505754	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28738723	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28791187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28799339	0.86[ASN][1000 genomes]
rs3736918	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs3887865	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4595710	0.95[EUR][1000 genomes]
rs4981093	1.00[EUR][1000 genomes]
rs4981838	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4981840	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs5025288	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6571408	0.95[EUR][1000 genomes]
rs6571409	1.00[CEU][hapmap]
rs7149420	0.90[EUR][1000 genomes]
rs7151378	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7156569	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7158257	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7159084	0.86[EUR][1000 genomes]
rs7160175	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7161078	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs72642558	0.87[ASN][1000 genomes]
rs8007411	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8008358	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8012940	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs8016487	0.95[EUR][1000 genomes]
rs942907	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9972227	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31782200-31875200	Weak transcription	Gastric	stomach
3	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
4	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
5	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
7	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:31801800-31862600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:31802800-31872000	Weak transcription	Fetal Brain Male	brain
10	chr14:31803600-31872600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:31803800-31852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:31805600-31851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:31806200-31850800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:31808000-31872600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:31809600-31872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:31811800-31854600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:31812200-31857400	Weak transcription	Fetal Heart	heart
18	chr14:31812800-31852400	Weak transcription	Brain Angular Gyrus	brain
19	chr14:31813200-31872800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:31814600-31849200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:31816000-31888800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:31824600-31846000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:31825400-31847200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr14:31825600-31872800	Weak transcription	Fetal Kidney	kidney
25	chr14:31825600-31878600	Weak transcription	Pancreas	Pancrea
26	chr14:31825800-31860200	Weak transcription	Psoas Muscle	Psoas
27	chr14:31826600-31847000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:31827000-31847200	Strong transcription	Adipose Nuclei	Adipose
29	chr14:31827400-31847400	Weak transcription	NHLF	lung
30	chr14:31827400-31874400	Weak transcription	Spleen	Spleen
31	chr14:31827600-31846400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:31828000-31866800	Weak transcription	Colonic Mucosa	Colon
33	chr14:31828200-31852600	Weak transcription	Fetal Brain Female	brain
34	chr14:31828400-31849000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr14:31830600-31862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:31832400-31844600	Weak transcription	Aorta	Aorta
37	chr14:31833800-31854400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:31836800-31847000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr14:31837000-31853800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr14:31837000-31858400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:31837200-31846800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:31837200-31852800	Strong transcription	Placenta	Placenta
43	chr14:31837200-31871800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:31838000-31852400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:31838000-31857200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:31838000-31875000	Weak transcription	K562	blood
47	chr14:31838600-31845800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:31838600-31852600	Weak transcription	Brain Substantia Nigra	brain
49	chr14:31839000-31862400	Weak transcription	Ovary	ovary
50	chr14:31839200-31844800	Strong transcription	Brain Inferior Temporal Lobe	brain

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