Variant report

Variant	rs10145767
Chromosome Location	chr14:31839237-31839238
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10130574	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10132752	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10134212	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10147468	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148707	0.91[ASN][1000 genomes]
rs10149123	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11156668	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627179	0.85[AMR][1000 genomes]
rs11844036	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850326	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12586712	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12883276	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12885363	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12886557	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17097814	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2094131	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2182256	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2378851	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2378852	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378853	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378857	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396248	0.95[EUR][1000 genomes]
rs28505754	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28738723	0.95[EUR][1000 genomes]
rs28791187	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3736918	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3887865	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4595710	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4981093	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4981838	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4981840	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5025288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6571408	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7149420	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151153	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7151378	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7156569	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7158257	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7159084	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160175	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7161078	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72642559	0.91[ASN][1000 genomes]
rs8007411	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8008358	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8012940	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8016487	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs942907	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31782200-31875200	Weak transcription	Gastric	stomach
3	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
4	chr14:31800200-31839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
6	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
8	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:31801800-31862600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:31802400-31842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:31802800-31872000	Weak transcription	Fetal Brain Male	brain
12	chr14:31803600-31872600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:31803800-31843600	Weak transcription	A549	lung
14	chr14:31803800-31852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:31805600-31851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:31806200-31850800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:31808000-31872600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:31809600-31872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:31811800-31854600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:31812200-31857400	Weak transcription	Fetal Heart	heart
21	chr14:31812800-31852400	Weak transcription	Brain Angular Gyrus	brain
22	chr14:31813200-31872800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr14:31814600-31849200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr14:31815200-31839600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:31816000-31888800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:31824600-31846000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:31825400-31840800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:31825400-31847200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr14:31825600-31840800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:31825600-31841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:31825600-31872800	Weak transcription	Fetal Kidney	kidney
32	chr14:31825600-31878600	Weak transcription	Pancreas	Pancrea
33	chr14:31825800-31843600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr14:31825800-31860200	Weak transcription	Psoas Muscle	Psoas
35	chr14:31826600-31840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:31826600-31847000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:31826800-31839600	Weak transcription	GM12878-XiMat	blood
38	chr14:31827000-31840800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr14:31827000-31841000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr14:31827000-31847200	Strong transcription	Adipose Nuclei	Adipose
41	chr14:31827400-31843400	Weak transcription	Right Ventricle	heart
42	chr14:31827400-31847400	Weak transcription	NHLF	lung
43	chr14:31827400-31874400	Weak transcription	Spleen	Spleen
44	chr14:31827600-31846400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr14:31828000-31866800	Weak transcription	Colonic Mucosa	Colon
46	chr14:31828200-31839600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr14:31828200-31852600	Weak transcription	Fetal Brain Female	brain
48	chr14:31828400-31839600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:31828400-31844000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:31828400-31849000	Weak transcription	Primary T cells fromperipheralblood	blood

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