Variant report

Variant	rs10134213
Chromosome Location	chr14:55823422-55823423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55811214..55813889-chr14:55823159..55825575,2	MCF-7	breast:
2	chr14:55737146..55740453-chr14:55819969..55824723,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10141396	0.92[AFR][1000 genomes]
rs10144418	0.93[AFR][1000 genomes]
rs1045004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11621265	0.99[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11626485	0.96[EUR][1000 genomes]
rs11851870	0.94[EUR][1000 genomes]
rs17674563	0.90[AFR][1000 genomes]
rs17742719	0.84[EUR][1000 genomes]
rs2039039	0.90[EUR][1000 genomes]
rs2209808	0.86[AFR][1000 genomes]
rs58296156	0.94[AFR][1000 genomes]
rs60726667	0.83[EUR][1000 genomes]
rs7147136	0.90[AFR][1000 genomes]
rs7150234	0.83[AFR][1000 genomes]
rs7152390	0.94[AFR][1000 genomes]
rs7154831	0.94[AFR][1000 genomes]
rs7158791	0.94[AFR][1000 genomes]
rs8005450	0.88[AFR][1000 genomes]
rs9919923	0.94[AFR][1000 genomes]
rs9919926	0.93[AFR][1000 genomes]
rs9919932	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv901957	chr14:55819219-55853724	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10134213	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
3	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:55813600-55837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:55814000-55830400	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
7	chr14:55816000-55837200	Weak transcription	K562	blood
8	chr14:55816400-55823600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:55817200-55823800	Strong transcription	Dnd41	blood
10	chr14:55817200-55826200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr14:55817200-55826400	Strong transcription	Fetal Stomach	stomach
12	chr14:55818000-55841800	Weak transcription	Hela-S3	cervix
13	chr14:55818200-55842800	Weak transcription	Brain Angular Gyrus	brain
14	chr14:55818200-55877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:55818400-55832400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:55818400-55858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:55818800-55842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:55819000-55835200	Weak transcription	NH-A	brain
19	chr14:55819200-55831600	Weak transcription	Aorta	Aorta
20	chr14:55819200-55832400	Weak transcription	HUVEC	blood vessel
21	chr14:55819200-55835400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:55819200-55836400	Weak transcription	Ovary	ovary
23	chr14:55819200-55842800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr14:55819400-55832200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:55819400-55832200	Weak transcription	Pancreas	Pancrea
26	chr14:55819400-55833400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:55819400-55847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:55819400-55850600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:55819400-55855200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:55819600-55824400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:55819600-55831800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:55819600-55832000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr14:55819600-55832200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:55819600-55832200	Weak transcription	Fetal Kidney	kidney
35	chr14:55819600-55832200	Weak transcription	Lung	lung
36	chr14:55819600-55832400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:55819600-55835400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr14:55819600-55836000	Weak transcription	Gastric	stomach
39	chr14:55819800-55831400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:55819800-55832200	Weak transcription	Primary B cells from cord blood	blood
41	chr14:55819800-55834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:55819800-55835000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:55819800-55835000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:55819800-55842200	Weak transcription	HSMM	muscle
45	chr14:55820000-55831800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr14:55820000-55831800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:55820000-55832400	Weak transcription	Liver	Liver
48	chr14:55820000-55834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:55820600-55824600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr14:55820600-55825200	Strong transcription	Fetal Muscle Leg	muscle

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