Variant report

Variant	rs7150234
Chromosome Location	chr14:55802181-55802182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55801706..55804048-chr14:55805319..55807550,2	MCF-7	breast:
2	chr14:55799382..55802320-chr14:55805290..55807790,2	K562	blood:
3	chr14:55736427..55740242-chr14:55801434..55807681,7	MCF-7	breast:
4	chr14:55795389..55798237-chr14:55800150..55802367,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258455	Chromatin interaction
ENSG00000178974	Chromatin interaction
ENSG00000258413	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10129505	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10131562	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10131730	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132453	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10134213	0.83[AFR][1000 genomes]
rs10134317	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10136596	0.91[ASN][1000 genomes]
rs10137307	0.91[ASN][1000 genomes]
rs10139000	0.91[ASN][1000 genomes]
rs10139083	0.87[ASN][1000 genomes]
rs10139337	0.86[ASN][1000 genomes]
rs10139683	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10140063	0.81[EUR][1000 genomes]
rs10140869	0.91[ASN][1000 genomes]
rs10141396	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141552	0.86[ASN][1000 genomes]
rs10142448	0.92[ASN][1000 genomes]
rs10142803	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10143136	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10144418	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10145203	0.88[ASN][1000 genomes]
rs10146637	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10147765	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10150760	0.92[ASN][1000 genomes]
rs1045002	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1045004	0.83[AFR][1000 genomes]
rs11158034	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158037	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11621089	0.97[EUR][1000 genomes]
rs11621265	0.84[AFR][1000 genomes]
rs11625001	0.88[ASN][1000 genomes]
rs11625423	0.91[ASN][1000 genomes]
rs11625968	0.82[ASN][1000 genomes]
rs11626751	0.92[ASN][1000 genomes]
rs11628437	0.88[ASN][1000 genomes]
rs11848456	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11848575	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11851169	0.93[ASN][1000 genomes]
rs12050099	0.89[ASN][1000 genomes]
rs12050123	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572611	0.92[ASN][1000 genomes]
rs17674463	0.92[ASN][1000 genomes]
rs17674563	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17675223	0.94[EUR][1000 genomes]
rs17740551	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17740741	0.89[ASN][1000 genomes]
rs17741542	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17741831	0.93[ASN][1000 genomes]
rs1972221	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2016931	0.91[ASN][1000 genomes]
rs2026633	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182797	0.82[ASN][1000 genomes]
rs2209808	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2297816	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28428911	0.91[ASN][1000 genomes]
rs28430823	0.93[ASN][1000 genomes]
rs28452705	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28493647	0.92[ASN][1000 genomes]
rs28612464	0.93[ASN][1000 genomes]
rs28660594	0.91[ASN][1000 genomes]
rs2880103	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35112084	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3742569	0.93[ASN][1000 genomes]
rs3783648	0.92[ASN][1000 genomes]
rs3783649	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3783651	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3783652	0.91[ASN][1000 genomes]
rs4366639	0.89[ASN][1000 genomes]
rs4496026	0.89[ASN][1000 genomes]
rs4580079	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56166765	0.81[EUR][1000 genomes]
rs56949365	0.88[ASN][1000 genomes]
rs58260073	0.87[ASN][1000 genomes]
rs58296156	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58458194	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59629906	0.88[ASN][1000 genomes]
rs59871474	0.85[ASN][1000 genomes]
rs60248556	0.86[ASN][1000 genomes]
rs6573017	0.83[ASN][1000 genomes]
rs66464079	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66551709	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66696758	0.89[ASN][1000 genomes]
rs67386901	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67412516	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67514154	0.89[ASN][1000 genomes]
rs67795323	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67822108	0.89[ASN][1000 genomes]
rs68046603	0.89[ASN][1000 genomes]
rs68138420	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7140628	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144737	0.92[ASN][1000 genomes]
rs7147136	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7147247	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7150763	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151581	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7151754	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7152390	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7153612	0.87[ASN][1000 genomes]
rs7153645	0.89[ASN][1000 genomes]
rs7154796	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154831	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154889	0.82[ASN][1000 genomes]
rs7155954	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7157308	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7158791	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7158861	0.85[ASN][1000 genomes]
rs7159824	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161439	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72715769	0.89[ASN][1000 genomes]
rs72717738	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73263927	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8003279	0.91[EUR][1000 genomes]
rs8005450	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008119	0.92[ASN][1000 genomes]
rs8013713	0.92[ASN][1000 genomes]
rs8014477	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8014540	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8015211	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8021583	0.86[ASN][1000 genomes]
rs9323285	0.94[EUR][1000 genomes]
rs9919923	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9919926	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9919932	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55779200-55817600	Weak transcription	Hela-S3	cervix
2	chr14:55780200-55807800	Weak transcription	Thymus	Thymus
3	chr14:55780600-55806200	Weak transcription	HMEC	breast
4	chr14:55780800-55817200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55782000-55817200	Weak transcription	HSMM	muscle
6	chr14:55786800-55803000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:55787200-55806600	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:55790400-55806800	Weak transcription	Aorta	Aorta
9	chr14:55791800-55817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:55793000-55808600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:55794000-55811800	Weak transcription	Brain Anterior Caudate	brain
12	chr14:55794400-55803000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:55795000-55806600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:55797600-55803000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:55797800-55807800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:55798200-55817200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:55798800-55802200	Enhancers	Fetal Intestine Small	intestine
18	chr14:55798800-55802200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:55799000-55802800	Enhancers	A549	lung
20	chr14:55799000-55804000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:55799400-55803600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:55799600-55804400	Enhancers	Fetal Kidney	kidney
23	chr14:55799800-55802200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:55799800-55804200	Weak transcription	Fetal Thymus	thymus
25	chr14:55800000-55802200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:55800000-55802800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:55800000-55804400	Weak transcription	K562	blood
28	chr14:55800000-55805000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:55800000-55806600	Weak transcription	Brain Angular Gyrus	brain
30	chr14:55800000-55806600	Weak transcription	Left Ventricle	heart
31	chr14:55800000-55806800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr14:55800000-55817200	Weak transcription	Dnd41	blood
33	chr14:55800200-55802200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:55800200-55805400	Enhancers	Stomach Mucosa	stomach
35	chr14:55800600-55816200	Weak transcription	Primary B cells from cord blood	blood
36	chr14:55800600-55823600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr14:55800800-55802400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:55801000-55802200	Enhancers	GM12878-XiMat	blood
39	chr14:55801000-55802400	Enhancers	Colonic Mucosa	Colon
40	chr14:55801000-55803000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr14:55801000-55806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:55801000-55806400	Weak transcription	Fetal Heart	heart
43	chr14:55801000-55806800	Weak transcription	HSMMtube	muscle
44	chr14:55801000-55807800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr14:55801000-55808400	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr14:55801000-55808600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:55801000-55817200	Weak transcription	HepG2	liver
48	chr14:55801200-55802800	Weak transcription	NHEK	skin
49	chr14:55801200-55803000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr14:55801200-55803200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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