Variant report

Variant	rs10135266
Chromosome Location	chr14:32897729-32897730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17098993	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17099064	1.00[EUR][1000 genomes]
rs17099150	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17099177	1.00[CEU][hapmap]
rs73267310	1.00[EUR][1000 genomes]
rs73267340	1.00[EUR][1000 genomes]
rs73267372	1.00[EUR][1000 genomes]
rs7342555	1.00[EUR][1000 genomes]
rs8005434	1.00[EUR][1000 genomes]
rs8010211	1.00[EUR][1000 genomes]
rs8014960	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32887800-32901800	Weak transcription	Ovary	ovary
2	chr14:32891800-32899400	Weak transcription	Osteobl	bone
3	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
5	chr14:32895400-32899000	Enhancers	Fetal Heart	heart
6	chr14:32895600-32898200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:32895800-32897800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:32895800-32898400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:32895800-32898600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:32895800-32899200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:32896000-32898200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:32896000-32898600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:32896200-32899200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:32896200-32902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:32896400-32898400	Enhancers	Brain Angular Gyrus	brain
16	chr14:32896400-32900400	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:32896600-32898400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:32896600-32899400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:32896600-32899600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:32896600-32902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:32896600-32902000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:32896800-32898000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:32896800-32898000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:32896800-32903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:32897200-32897800	Flanking Active TSS	Brain Germinal Matrix	brain
26	chr14:32897200-32898000	Enhancers	Left Ventricle	heart
27	chr14:32897200-32898000	Enhancers	NH-A	brain
28	chr14:32897200-32898400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:32897200-32898400	Enhancers	Fetal Brain Male	brain
30	chr14:32897200-32899400	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr14:32897400-32897800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:32897400-32897800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:32897400-32898000	Active TSS	Aorta	Aorta
34	chr14:32897400-32898200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:32897400-32898400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr14:32897400-32898400	Active TSS	Rectal Smooth Muscle	rectum
37	chr14:32897400-32899000	Enhancers	Fetal Lung	lung
38	chr14:32897400-32899600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:32897600-32897800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:32897600-32898000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr14:32897600-32898200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr14:32897600-32898200	Active TSS	Right Atrium	heart
43	chr14:32897600-32898400	Enhancers	Esophagus	oesophagus
44	chr14:32897600-32899000	Active TSS	Right Ventricle	heart
45	chr14:32897600-32899600	Active TSS	Stomach Smooth Muscle	stomach
46	chr14:32897600-32899800	Active TSS	Colon Smooth Muscle	Colon
47	chr14:32897600-32901200	Enhancers	Brain Substantia Nigra	brain
48	chr14:32897600-32908400	Weak transcription	Fetal Brain Female	brain

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