Variant report

Variant	rs17099064
Chromosome Location	chr14:32895703-32895704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133184	1.00[MEX][hapmap]
rs10135266	1.00[EUR][1000 genomes]
rs10140712	1.00[MEX][hapmap]
rs11847643	1.00[MEX][hapmap]
rs17098817	1.00[MEX][hapmap]
rs17098993	1.00[EUR][1000 genomes]
rs17099150	1.00[EUR][1000 genomes]
rs17099228	1.00[MEX][hapmap]
rs3784169	1.00[MEX][hapmap]
rs73267310	1.00[EUR][1000 genomes]
rs73267340	1.00[EUR][1000 genomes]
rs73267372	1.00[EUR][1000 genomes]
rs7342555	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8005434	1.00[EUR][1000 genomes]
rs8010211	1.00[EUR][1000 genomes]
rs8014960	1.00[MEX][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:32887800-32895800	Weak transcription	Left Ventricle	heart
3	chr14:32887800-32901800	Weak transcription	Ovary	ovary
4	chr14:32888800-32895800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:32889600-32896000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:32890000-32895800	Weak transcription	Brain Angular Gyrus	brain
7	chr14:32890000-32895800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:32891000-32895800	Weak transcription	Brain Anterior Caudate	brain
9	chr14:32891200-32895800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:32891400-32895800	Weak transcription	NH-A	brain
11	chr14:32891800-32899400	Weak transcription	Osteobl	bone
12	chr14:32892000-32896200	Weak transcription	Right Ventricle	heart
13	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:32892800-32895800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:32894600-32896000	Enhancers	Brain Germinal Matrix	brain
16	chr14:32895200-32897600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
18	chr14:32895400-32896000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:32895400-32899000	Enhancers	Fetal Heart	heart
20	chr14:32895600-32896400	Enhancers	HUVEC	blood vessel
21	chr14:32895600-32896600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:32895600-32897400	Enhancers	Brain Substantia Nigra	brain
23	chr14:32895600-32898200	Enhancers	HUES64 Cell Line	embryonic stem cell

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