Variant report

Variant	rs17099228
Chromosome Location	chr14:33001742-33001743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10140712	1.00[MEX][hapmap]
rs17098817	1.00[MEX][hapmap]
rs17099064	1.00[MEX][hapmap]
rs17099234	0.83[AMR][1000 genomes]
rs2383342	1.00[AMR][1000 genomes]
rs3784169	1.00[MEX][hapmap]
rs60685515	0.83[AMR][1000 genomes]
rs73269447	0.83[AMR][1000 genomes]
rs73273435	0.83[AMR][1000 genomes]
rs7342555	1.00[MEX][hapmap]
rs8014960	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1235	chr14:32986527-33011524	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32980400-33002000	Weak transcription	Aorta	Aorta
2	chr14:32983600-33006000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:32984400-33004800	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:32994200-33015000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:32994800-33011600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:32995000-33004600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:32995200-33002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:32998000-33003000	Enhancers	Fetal Heart	heart
9	chr14:32999400-33003000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:32999400-33003000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr14:32999600-33001800	Enhancers	Fetal Brain Male	brain
12	chr14:32999800-33002000	Weak transcription	Left Ventricle	heart
13	chr14:33000000-33012800	Weak transcription	Right Atrium	heart
14	chr14:33000200-33008200	Weak transcription	Liver	Liver
15	chr14:33001200-33001800	Enhancers	Psoas Muscle	Psoas
16	chr14:33001200-33002000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:33001400-33001800	Enhancers	Fetal Brain Female	brain
18	chr14:33001400-33002000	Enhancers	Brain Hippocampus Middle	brain
19	chr14:33001400-33003000	Enhancers	Right Ventricle	heart
20	chr14:33001600-33002000	Enhancers	Brain Angular Gyrus	brain
21	chr14:33001600-33002200	Enhancers	HSMMtube	muscle
22	chr14:33001600-33002800	Enhancers	Brain Substantia Nigra	brain

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