Variant report

Variant	rs73269447
Chromosome Location	chr14:33011257-33011258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17099228	0.83[AMR][1000 genomes]
rs17099234	1.00[AMR][1000 genomes]
rs2383342	0.83[AMR][1000 genomes]
rs60685515	1.00[AMR][1000 genomes]
rs73273435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1235	chr14:32986527-33011524	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32994200-33015000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:32994800-33011600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:33000000-33012800	Weak transcription	Right Atrium	heart
4	chr14:33001800-33014400	Weak transcription	Psoas Muscle	Psoas
5	chr14:33001800-33030000	Weak transcription	Fetal Brain Male	brain
6	chr14:33002600-33011600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:33002800-33011800	Weak transcription	Left Ventricle	heart
8	chr14:33002800-33014800	Weak transcription	Ovary	ovary
9	chr14:33003200-33014200	Weak transcription	Brain Anterior Caudate	brain
10	chr14:33003400-33014400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:33003400-33014600	Weak transcription	Brain Germinal Matrix	brain
12	chr14:33003600-33014600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:33004200-33020200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:33004800-33019000	Weak transcription	Esophagus	oesophagus
15	chr14:33005000-33011600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:33005000-33014600	Weak transcription	Right Ventricle	heart
17	chr14:33005200-33013200	Weak transcription	Fetal Intestine Large	intestine
18	chr14:33005600-33011600	Weak transcription	Aorta	Aorta
19	chr14:33005600-33014600	Weak transcription	HSMMtube	muscle
20	chr14:33005800-33023600	Weak transcription	Fetal Brain Female	brain
21	chr14:33006400-33014400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:33006800-33014400	Weak transcription	Fetal Muscle Leg	muscle
23	chr14:33009200-33011600	Weak transcription	Brain Substantia Nigra	brain
24	chr14:33009800-33011400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:33009800-33011400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr14:33010000-33011800	Weak transcription	Brain Angular Gyrus	brain
27	chr14:33010800-33014400	Weak transcription	Liver	Liver
28	chr14:33011000-33011600	Enhancers	Fetal Heart	heart
29	chr14:33011200-33012200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr14:33011200-33016200	Enhancers	Brain Hippocampus Middle	brain

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