Variant report

Variant	rs10135320
Chromosome Location	chr14:68434826-68434827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68433451..68436244-chr14:68656284..68658586,2	MCF-7	breast:
2	chr14:68431307..68432866-chr14:68433303..68436156,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11846526	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12431697	0.80[AFR][1000 genomes]
rs4899230	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
2	chr14:68428600-68435000	Enhancers	Fetal Intestine Large	intestine
3	chr14:68429400-68445200	Weak transcription	Ovary	ovary
4	chr14:68429600-68444400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:68432000-68438200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:68432400-68437800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:68432400-68437800	Weak transcription	HMEC	breast
8	chr14:68432400-68439000	Weak transcription	Small Intestine	intestine
9	chr14:68432600-68438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:68432600-68438800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:68432800-68437000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:68433000-68436800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:68433200-68435600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:68433400-68436000	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:68433400-68438800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:68433400-68444000	Weak transcription	Fetal Stomach	stomach
17	chr14:68433600-68435200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:68433600-68435200	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr14:68433600-68439000	Weak transcription	Fetal Lung	lung
20	chr14:68433800-68436200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr14:68434200-68435000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:68434400-68435800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68434400-68437600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:68434400-68438600	Weak transcription	Stomach Mucosa	stomach
25	chr14:68434600-68437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:68434600-68438400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:68434600-68438600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:68434800-68436800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr14:68434800-68437800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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