Variant report

Variant	rs11846526
Chromosome Location	chr14:68556744-68556745
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10129612	0.84[YRI][hapmap]
rs10135320	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12431697	0.87[YRI][hapmap]
rs12437043	0.85[YRI][hapmap]
rs12880237	0.85[YRI][hapmap]
rs1555944	0.90[YRI][hapmap]
rs17104800	0.87[YRI][hapmap]
rs17105269	0.82[YRI][hapmap]
rs6573817	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68555400-68557000	Enhancers	Fetal Kidney	kidney
3	chr14:68555600-68557000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:68555600-68557000	Enhancers	Fetal Muscle Leg	muscle
5	chr14:68555600-68557200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:68555600-68557200	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68555600-68557200	Enhancers	Rectal Smooth Muscle	rectum
8	chr14:68556000-68557000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:68556000-68557000	Enhancers	Fetal Lung	lung
10	chr14:68556400-68557000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr14:68556400-68557200	Enhancers	A549	lung
12	chr14:68556400-68568400	Weak transcription	Primary T cells from cord blood	blood
13	chr14:68556600-68561000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:68556600-68561800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:68556600-68565400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:68556600-68568000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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