Variant report

Variant	rs10129612
Chromosome Location	chr14:68494470-68494471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68493364..68496206-chr14:69260211..69263081,2	MCF-7	breast:
2	chr14:68492413..68494672-chr14:68501248..68502997,2	MCF-7	breast:
3	chr14:68494249..68496187-chr14:69260039..69261699,2	MCF-7	breast:
4	chr14:68493009..68495162-chr14:68495354..68497279,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 222 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs10129355	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130829	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10132022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133262	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10133883	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10134124	0.90[JPT][hapmap]
rs10134320	0.88[JPT][hapmap]
rs10134664	0.90[JPT][hapmap]
rs10135046	0.90[JPT][hapmap]
rs10135256	0.90[JPT][hapmap]
rs10135316	0.80[JPT][hapmap]
rs10136129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10136174	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10136790	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10136868	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10137233	0.81[ASN][1000 genomes]
rs10139236	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10139386	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10139548	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10140097	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140282	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140420	0.81[ASN][1000 genomes]
rs10140493	0.81[ASN][1000 genomes]
rs10141018	0.89[JPT][hapmap]
rs10143219	0.80[JPT][hapmap]
rs10143455	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143843	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10143895	0.80[JPT][hapmap]
rs10144224	0.90[JPT][hapmap]
rs10144995	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145197	0.90[JPT][hapmap]
rs10145884	0.80[JPT][hapmap]
rs10146719	0.80[JPT][hapmap]
rs10147311	0.89[JPT][hapmap]
rs10148527	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10150584	0.90[JPT][hapmap]
rs10151115	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10151123	0.80[JPT][hapmap]
rs10151317	0.80[JPT][hapmap]
rs10151387	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10467735	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1080956	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080957	0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1080958	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873210	0.90[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11158715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158716	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11158717	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158719	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158720	0.89[JPT][hapmap]
rs11158721	0.89[JPT][hapmap]
rs11622135	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11622243	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11622787	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11623355	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623467	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11623984	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11624209	0.81[ASN][1000 genomes]
rs11624609	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs11626280	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11628745	0.81[ASN][1000 genomes]
rs11844529	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11844842	0.90[JPT][hapmap]
rs11846344	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11846526	0.84[YRI][hapmap]
rs11847339	0.90[JPT][hapmap]
rs11848187	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11848769	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs11850191	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11850946	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11851991	0.89[JPT][hapmap]
rs11852180	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852208	0.84[EUR][1000 genomes]
rs12100584	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12431697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12432681	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12435554	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12437043	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs12437178	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12437276	0.83[EUR][1000 genomes]
rs13329056	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1548264	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1548265	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17104764	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104774	0.80[JPT][hapmap]
rs17104776	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17104800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104824	0.80[JPT][hapmap]
rs17104829	0.80[JPT][hapmap]
rs17104862	0.90[JPT][hapmap]
rs17104863	0.89[JPT][hapmap]
rs17104880	0.90[JPT][hapmap]
rs17104889	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17104900	0.90[JPT][hapmap]
rs17104908	1.00[JPT][hapmap]
rs17104917	0.89[JPT][hapmap]
rs17104947	0.90[JPT][hapmap]
rs17104953	0.86[JPT][hapmap]
rs17104992	0.90[JPT][hapmap]
rs17105001	0.90[JPT][hapmap]
rs17192558	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs17192586	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs17783304	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1810639	0.81[ASN][1000 genomes]
rs1950767	0.88[ASN][1000 genomes]
rs1951411	0.89[JPT][hapmap]
rs1980654	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1980655	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2009191	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2038565	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs2057361	0.88[JPT][hapmap]
rs2093358	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208596	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588832	0.81[JPT][hapmap]
rs2588833	0.81[JPT][hapmap]
rs2767366	0.81[JPT][hapmap]
rs28444723	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28470365	0.82[EUR][1000 genomes]
rs28474827	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28474995	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28488544	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28509330	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2877369	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28855496	0.88[ASN][1000 genomes]
rs33949561	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34588410	0.83[EUR][1000 genomes]
rs34723132	0.82[EUR][1000 genomes]
rs372143	0.81[JPT][hapmap]
rs373918	0.82[JPT][hapmap]
rs401021	0.82[JPT][hapmap]
rs408156	0.82[JPT][hapmap]
rs431649	0.81[JPT][hapmap]
rs437585	0.81[JPT][hapmap]
rs4436722	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4899231	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4899232	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902533	0.88[ASN][1000 genomes]
rs4902535	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902536	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902538	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902539	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902540	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902544	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902545	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902547	0.81[ASN][1000 genomes]
rs4902548	0.89[JPT][hapmap]
rs4902550	0.89[JPT][hapmap]
rs57990032	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58151429	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60201005	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60415085	0.92[ASN][1000 genomes]
rs60471554	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573800	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573801	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573805	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573814	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573815	0.89[JPT][hapmap]
rs6573816	0.89[JPT][hapmap]
rs67566613	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68139749	0.81[ASN][1000 genomes]
rs7142112	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7142210	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7142860	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7145044	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7145771	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7146354	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147522	0.89[JPT][hapmap]
rs7147935	0.89[JPT][hapmap]
rs7148799	0.89[JPT][hapmap]
rs7149343	0.89[JPT][hapmap]
rs7149460	0.80[JPT][hapmap]
rs7150168	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7150716	0.88[JPT][hapmap]
rs7151917	0.82[EUR][1000 genomes]
rs7154014	0.80[EUR][1000 genomes]
rs7154228	0.89[JPT][hapmap]
rs7154645	0.88[JPT][hapmap]
rs7154646	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7154725	0.80[JPT][hapmap]
rs7155097	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7155840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155985	0.82[EUR][1000 genomes]
rs7157152	0.84[JPT][hapmap]
rs7157185	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7157550	0.80[JPT][hapmap]
rs7157720	0.80[JPT][hapmap]
rs7158544	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160115	0.81[CEU][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7161069	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725141	0.82[EUR][1000 genomes]
rs72725149	0.82[EUR][1000 genomes]
rs72725151	0.83[EUR][1000 genomes]
rs72725153	0.83[EUR][1000 genomes]
rs72725157	0.83[EUR][1000 genomes]
rs72725165	0.84[EUR][1000 genomes]
rs72725168	0.83[EUR][1000 genomes]
rs72725170	0.83[EUR][1000 genomes]
rs72725172	0.80[EUR][1000 genomes]
rs72725190	0.81[ASN][1000 genomes]
rs7359083	0.89[JPT][hapmap]
rs8006175	0.80[JPT][hapmap]
rs8006437	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8006492	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8007347	0.89[JPT][hapmap]
rs8011621	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8012493	0.89[JPT][hapmap]
rs8013677	0.94[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8014000	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8015128	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs8016525	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8018029	0.89[JPT][hapmap]
rs8020795	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021404	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs8022206	0.80[EUR][1000 genomes]
rs9323501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9323502	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs957930	0.89[JPT][hapmap]
rs9652362	0.80[JPT][hapmap]
rs9652364	0.80[JPT][hapmap]
rs9672111	0.89[JPT][hapmap]
rs9672142	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68480000-68495000	Weak transcription	Ovary	ovary
2	chr14:68488400-68496800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68493400-68496000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:68493600-68494800	Enhancers	NHEK	skin
5	chr14:68493800-68494800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:68493800-68494800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:68493800-68494800	Enhancers	Osteobl	bone
8	chr14:68494000-68494600	Enhancers	HMEC	breast
9	chr14:68494200-68494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:68494200-68494600	Weak transcription	Fetal Intestine Small	intestine

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