Variant report

Variant	rs10141018
Chromosome Location	chr14:68603863-68603864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68541688..68545482-chr14:68601842..68606347,5	MCF-7	breast:
2	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
3	chr14:68602556..68605498-chr14:68644856..68647677,2	MCF-7	breast:
4	chr14:68601379..68608308-chr14:69256404..69263440,24	MCF-7	breast:
5	chr14:68602359..68604172-chr14:68607453..68609034,2	K562	blood:
6	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:
7	chr14:68600338..68604507-chr14:69260783..69264203,4	MCF-7	breast:
8	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
9	chr14:68603270..68607294-chr14:68934008..68937330,4	MCF-7	breast:
10	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
11	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
12	chr14:68602094..68605658-chr14:68697621..68700210,3	MCF-7	breast:
13	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
14	chr14:68532345..68534667-chr14:68601779..68604351,2	MCF-7	breast:
15	chr14:68603253..68606404-chr14:68630681..68636382,6	MCF-7	breast:
16	chr14:68603181..68605739-chr14:68855222..68857366,2	MCF-7	breast:
17	chr14:68405383..68414524-chr14:68603693..68608960,22	MCF-7	breast:
18	chr14:68430411..68433270-chr14:68602747..68607900,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10129612	0.89[JPT][hapmap]
rs10132711	0.84[JPT][hapmap]
rs10132828	0.82[JPT][hapmap]
rs10133770	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10134124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10134320	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10134664	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10135046	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10135256	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10135316	0.90[JPT][hapmap]
rs10137330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137457	1.00[JPT][hapmap]
rs10137712	0.89[JPT][hapmap]
rs10139236	0.81[JPT][hapmap]
rs10139386	0.81[JPT][hapmap]
rs10143219	0.90[JPT][hapmap]
rs10143895	0.90[JPT][hapmap]
rs10144128	0.89[JPT][hapmap]
rs10144224	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10145197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10146719	0.90[JPT][hapmap]
rs10146831	0.86[JPT][hapmap]
rs10147311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	0.89[JPT][hapmap]
rs10148713	1.00[EUR][1000 genomes]
rs10149801	0.87[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10150584	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10151123	0.90[JPT][hapmap]
rs10151317	0.90[JPT][hapmap]
rs10450891	0.89[JPT][hapmap]
rs1080958	0.81[JPT][hapmap]
rs10873211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10873212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158710	0.89[JPT][hapmap]
rs11158720	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11158721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11844842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11847339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11849196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11851597	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11851991	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1548264	0.81[JPT][hapmap]
rs17104786	0.89[JPT][hapmap]
rs17104793	0.89[JPT][hapmap]
rs17104796	0.89[JPT][hapmap]
rs17104799	0.89[JPT][hapmap]
rs17104823	0.89[JPT][hapmap]
rs17104824	0.90[JPT][hapmap]
rs17104827	0.90[JPT][hapmap]
rs17104829	0.90[JPT][hapmap]
rs17104862	1.00[JPT][hapmap]
rs17104863	1.00[JPT][hapmap]
rs17104880	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17104900	1.00[JPT][hapmap]
rs17104917	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17104947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17105001	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1950766	0.89[JPT][hapmap]
rs1951411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057361	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767364	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28372014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28716846	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60562079	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60841871	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573802	0.88[JPT][hapmap]
rs6573815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145089	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7148799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7153978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154725	0.90[JPT][hapmap]
rs7155152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7157152	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7157550	0.90[JPT][hapmap]
rs7160068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7161070	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73286292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7359083	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8007347	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8008413	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8011367	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8012493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8013061	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8018029	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8020512	0.89[JPT][hapmap]
rs957930	1.00[JPT][hapmap]
rs9652362	0.90[JPT][hapmap]
rs9652363	0.90[JPT][hapmap]
rs9652364	0.90[JPT][hapmap]
rs9672111	1.00[JPT][hapmap]
rs9796374	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3523718	chr14:68601299-68605697	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3421508	chr14:68601799-68604997	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3523696	chr14:68602224-68605072	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2489967	chr14:68602325-68604366	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3323995	chr14:68602399-68604747	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3523663	chr14:68602570-68604062	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv9245	chr14:68602803-68603881	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv512364	chr14:68602807-68603941	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3523685	chr14:68602849-68604247	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2315033	chr14:68602870-68603913	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3393250	chr14:68602929-68603909	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3499081	chr14:68602933-68603898	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
2	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68594200-68604400	Weak transcription	Fetal Stomach	stomach
4	chr14:68596200-68604800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:68599800-68604400	Weak transcription	Ovary	ovary
6	chr14:68600000-68604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68600000-68606200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:68601200-68606400	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:68601400-68604400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:68601800-68604200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:68601800-68607200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:68601800-68608800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:68601800-68613600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:68601800-68614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:68601800-68614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:68601800-68615600	Enhancers	HMEC	breast
17	chr14:68602000-68607400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:68602200-68606600	Enhancers	NHEK	skin
19	chr14:68602400-68604000	Weak transcription	Fetal Kidney	kidney
20	chr14:68602400-68604200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:68602400-68604200	Weak transcription	Stomach Mucosa	stomach
22	chr14:68602400-68609600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:68602400-68610200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:68602600-68604200	Weak transcription	NHLF	lung
25	chr14:68602800-68604000	Weak transcription	NH-A	brain
26	chr14:68603000-68604000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:68603000-68605000	Enhancers	Fetal Muscle Leg	muscle
28	chr14:68603400-68608800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr14:68603600-68604000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:68603600-68604200	Enhancers	A549	lung
31	chr14:68603600-68605000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:68603600-68605000	Enhancers	HSMMtube	muscle
33	chr14:68603600-68605200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:68603600-68608000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:68603800-68604000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr14:68603800-68604000	Enhancers	Esophagus	oesophagus
37	chr14:68603800-68604600	Enhancers	Adipose Nuclei	Adipose
38	chr14:68603800-68604600	Enhancers	GM12878-XiMat	blood
39	chr14:68603800-68604800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr14:68603800-68604800	Enhancers	Fetal Muscle Trunk	muscle
41	chr14:68603800-68604800	Enhancers	Left Ventricle	heart
42	chr14:68603800-68604800	Enhancers	Pancreas	Pancrea
43	chr14:68603800-68604800	Enhancers	Rectal Smooth Muscle	rectum
44	chr14:68603800-68604800	Enhancers	Stomach Smooth Muscle	stomach
45	chr14:68603800-68605000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:68603800-68605000	Enhancers	Placenta	Placenta
47	chr14:68603800-68605200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr14:68603800-68605200	Enhancers	Osteobl	bone
49	chr14:68603800-68605400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:68603800-68605600	Enhancers	Skeletal Muscle Male	skeletal muscle

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