Variant report

Variant	rs17105001
Chromosome Location	chr14:68596097-68596098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.90[JPT][hapmap]
rs10132022	0.81[JPT][hapmap]
rs10132711	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10132828	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10133770	0.86[ASN][1000 genomes]
rs10134124	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10134320	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10134664	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135046	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135256	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135316	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10135925	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10137330	0.94[ASN][1000 genomes]
rs10137457	1.00[JPT][hapmap]
rs10137712	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10139236	0.82[JPT][hapmap]
rs10139386	0.82[JPT][hapmap]
rs10140465	0.90[ASN][1000 genomes]
rs10141018	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10143219	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10143455	0.81[JPT][hapmap]
rs10143895	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10144128	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10144224	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10145197	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10145820	0.89[ASN][1000 genomes]
rs10146719	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10146766	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10146831	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10147311	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10147569	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10148713	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149801	0.90[ASN][1000 genomes]
rs10150584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10150789	0.90[ASN][1000 genomes]
rs10151123	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10151317	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs10450891	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1080958	0.82[JPT][hapmap]
rs10873211	0.94[ASN][1000 genomes]
rs10873212	0.94[ASN][1000 genomes]
rs11158710	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11158719	0.81[JPT][hapmap]
rs11158720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11158721	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.81[JPT][hapmap]
rs11623467	0.81[JPT][hapmap]
rs11844842	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs11847339	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11849196	0.94[ASN][1000 genomes]
rs11851597	0.90[ASN][1000 genomes]
rs11851991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12437178	0.81[JPT][hapmap]
rs1548264	0.82[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104783	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs17104786	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104793	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104796	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104799	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104823	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104824	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs17104827	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104829	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs17104862	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17104863	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17104880	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104889	0.81[JPT][hapmap]
rs17104900	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104908	0.81[JPT][hapmap]
rs17104917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17104947	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17104953	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17104992	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1950766	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1951411	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1980654	0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2208596	0.81[JPT][hapmap]
rs28372014	0.90[ASN][1000 genomes]
rs28448732	0.89[ASN][1000 genomes]
rs28716846	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34370899	0.94[ASN][1000 genomes]
rs4902548	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4902550	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs60562079	0.90[ASN][1000 genomes]
rs60841871	0.94[ASN][1000 genomes]
rs6573802	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs6573805	0.81[JPT][hapmap]
rs6573815	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6573816	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7145089	0.90[ASN][1000 genomes]
rs7147522	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7147935	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7148799	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7149343	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7150168	0.81[JPT][hapmap]
rs7150716	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7153978	0.90[ASN][1000 genomes]
rs7154228	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7154645	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7154725	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs7155152	0.90[ASN][1000 genomes]
rs7157152	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7157550	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs7158544	0.81[JPT][hapmap]
rs7160068	0.94[ASN][1000 genomes]
rs7161070	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73286292	0.94[ASN][1000 genomes]
rs7359083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8007347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8008413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8008791	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8011367	0.94[ASN][1000 genomes]
rs8012493	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8013061	0.94[ASN][1000 genomes]
rs8014000	0.81[JPT][hapmap]
rs8015741	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8018029	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8020512	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8020795	0.81[JPT][hapmap]
rs957930	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9652362	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs9652363	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs9652364	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs9672111	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9796374	0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68592200-68603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:68592400-68597400	Weak transcription	Aorta	Aorta
4	chr14:68592400-68598600	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:68592400-68598800	Weak transcription	Ovary	ovary
6	chr14:68592400-68602200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
8	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:68592800-68598200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:68593000-68598800	Weak transcription	NH-A	brain
11	chr14:68593400-68598400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:68593400-68598600	Weak transcription	Fetal Kidney	kidney
13	chr14:68593400-68602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:68593400-68603400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:68593600-68599000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:68594200-68598800	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:68594200-68598800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:68594200-68599400	Weak transcription	A549	lung
19	chr14:68594200-68604400	Weak transcription	Fetal Stomach	stomach
20	chr14:68594600-68597200	Weak transcription	Fetal Lung	lung
21	chr14:68594600-68598000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:68595800-68596400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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