Variant report

Variant	rs10132711
Chromosome Location	chr14:68437745-68437746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68405721..68408476-chr14:68436012..68438843,2	MCF-7	breast:
2	chr14:68436786..68439178-chr14:68441166..68444882,3	MCF-7	breast:
3	chr14:68436871..68439999-chr14:69260948..69263315,4	MCF-7	breast:
4	chr14:68436875..68439784-chr14:68657602..68660339,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 185 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs10130605	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133262	0.86[JPT][hapmap]
rs10133485	1.00[ASN][1000 genomes]
rs10133652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10134124	0.86[JPT][hapmap]
rs10134320	0.86[JPT][hapmap]
rs10134664	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes]
rs10135046	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes]
rs10135256	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AFR][1000 genomes]
rs10135316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10136129	0.88[JPT][hapmap]
rs10136790	0.88[JPT][hapmap]
rs10137457	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10138719	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10140465	0.90[AFR][1000 genomes]
rs10141018	0.84[JPT][hapmap]
rs10142285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143843	0.88[JPT][hapmap]
rs10143895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144224	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AFR][1000 genomes]
rs10145197	0.86[JPT][hapmap]
rs10145820	0.83[AFR][1000 genomes]
rs10145884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10146113	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146189	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10147311	0.84[JPT][hapmap]
rs10147569	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147820	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148527	0.88[JPT][hapmap]
rs10148893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10150330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10150584	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10150789	0.91[AFR][1000 genomes]
rs10151123	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158720	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs11158721	0.84[JPT][hapmap]
rs1118397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11844529	0.86[JPT][hapmap]
rs11844842	0.86[JPT][hapmap]
rs11846344	0.86[JPT][hapmap]
rs11847339	0.86[JPT][hapmap]
rs11850191	0.86[JPT][hapmap]
rs11851991	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs11852180	0.86[JPT][hapmap]
rs12100584	0.88[JPT][hapmap]
rs12431697	0.86[JPT][hapmap]
rs17104758	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104764	0.88[JPT][hapmap]
rs17104774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104776	0.88[JPT][hapmap]
rs17104783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104800	0.88[JPT][hapmap]
rs17104823	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104824	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104880	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AFR][1000 genomes]
rs17104900	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes]
rs17104917	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs17104947	0.86[JPT][hapmap]
rs17104953	0.84[JPT][hapmap]
rs17104992	0.86[JPT][hapmap]
rs17105001	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs17783202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1951411	0.84[JPT][hapmap]
rs2057361	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs2180537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	0.91[ASN][1000 genomes]
rs28434770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28448732	0.88[AFR][1000 genomes]
rs28473357	1.00[AMR][1000 genomes]
rs28516665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751961	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28757308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2877369	0.86[JPT][hapmap]
rs28816808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28835585	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28847917	1.00[AMR][1000 genomes]
rs28869007	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[ASN][1000 genomes]
rs34700596	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3742885	0.84[CHB][hapmap]
rs4436722	0.86[JPT][hapmap]
rs4899228	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899229	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902523	0.84[CHB][hapmap]
rs4902525	0.83[AMR][1000 genomes]
rs4902529	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902530	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902532	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4902535	0.86[JPT][hapmap]
rs4902536	0.86[JPT][hapmap]
rs4902537	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	0.86[JPT][hapmap]
rs4902540	0.86[JPT][hapmap]
rs4902541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902548	0.84[JPT][hapmap]
rs4902550	0.84[JPT][hapmap]
rs60014063	1.00[ASN][1000 genomes]
rs6573802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573815	0.84[JPT][hapmap]
rs6573816	0.84[JPT][hapmap]
rs7140987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7142112	0.88[JPT][hapmap]
rs7142210	0.88[JPT][hapmap]
rs7146354	0.88[JPT][hapmap]
rs7147296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7147522	0.84[JPT][hapmap]
rs7147935	0.84[JPT][hapmap]
rs7148799	0.84[JPT][hapmap]
rs7149343	0.84[JPT][hapmap]
rs7149460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	0.84[CHB][hapmap]
rs7150716	0.82[JPT][hapmap]
rs7153470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7154228	0.84[JPT][hapmap]
rs7154645	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7154646	0.86[JPT][hapmap]
rs7154725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155097	0.86[JPT][hapmap]
rs7155840	0.86[JPT][hapmap]
rs7157152	0.84[JPT][hapmap]
rs7157185	0.86[JPT][hapmap]
rs7157550	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73284210	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359083	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs8003181	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8007347	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs8007989	0.84[CHB][hapmap]
rs8008791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8012493	0.84[JPT][hapmap]
rs8014844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8015595	0.84[CHB][hapmap]
rs8015741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016525	0.88[JPT][hapmap]
rs8016563	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8017930	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018029	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[AFR][1000 genomes]
rs8019420	0.83[AMR][1000 genomes]
rs8020512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9323501	0.86[JPT][hapmap]
rs957930	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672142	0.84[JPT][hapmap]
rs9796374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68429400-68445200	Weak transcription	Ovary	ovary
2	chr14:68429600-68444400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:68432000-68438200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68432400-68437800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:68432400-68437800	Weak transcription	HMEC	breast
6	chr14:68432400-68439000	Weak transcription	Small Intestine	intestine
7	chr14:68432600-68438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:68432600-68438800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:68433400-68438800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr14:68433400-68444000	Weak transcription	Fetal Stomach	stomach
11	chr14:68433600-68439000	Weak transcription	Fetal Lung	lung
12	chr14:68434400-68438600	Weak transcription	Stomach Mucosa	stomach
13	chr14:68434600-68438400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:68434600-68438600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:68434800-68437800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:68435000-68438000	Weak transcription	Fetal Intestine Large	intestine
17	chr14:68435000-68438800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:68436000-68440200	Enhancers	Colon Smooth Muscle	Colon
19	chr14:68436200-68438800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:68436600-68439000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:68436600-68439200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:68436800-68438000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr14:68436800-68438600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:68436800-68438800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr14:68436800-68439000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr14:68436800-68439000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr14:68436800-68439400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr14:68436800-68439400	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:68437000-68440400	Enhancers	Fetal Intestine Small	intestine
30	chr14:68437200-68438200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr14:68437200-68438800	Enhancers	A549	lung
32	chr14:68437600-68437800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr14:68437600-68439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links