Variant report

Variant	rs4902543
Chromosome Location	chr14:68431978-68431979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68430688..68433129-chr14:68446036..68448949,3	MCF-7	breast:
2	chr14:68421406..68425336-chr14:68430124..68433413,6	MCF-7	breast:
3	chr14:68431169..68433591-chr14:68443771..68448104,4	MCF-7	breast:
4	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
5	chr14:68431307..68432866-chr14:68433303..68436156,2	K562	blood:
6	chr14:68430411..68433270-chr14:68602747..68607900,7	MCF-7	breast:
7	chr14:68431037..68432737-chr14:68710733..68713003,2	MCF-7	breast:
8	chr14:68429774..68432676-chr14:68633532..68635323,2	MCF-7	breast:
9	chr14:68431871..68434787-chr14:68656702..68659683,2	MCF-7	breast:
10	chr14:68410663..68413615-chr14:68431263..68433122,2	MCF-7	breast:
11	chr14:68407550..68410213-chr14:68431629..68433238,2	MCF-7	breast:
12	chr14:68430287..68432974-chr14:68711186..68712879,2	MCF-7	breast:
13	chr14:68431210..68433040-chr14:68605467..68607589,3	MCF-7	breast:
14	chr14:68429820..68432700-chr14:68441833..68443817,2	MCF-7	breast:
15	chr14:68428134..68434454-chr14:69257495..69262698,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10130605	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133485	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10142285	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143219	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143895	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147820	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10148893	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104824	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17783202	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2180537	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516665	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28751961	0.85[EUR][1000 genomes]
rs28757308	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.85[EUR][1000 genomes]
rs28835585	0.85[EUR][1000 genomes]
rs28847917	0.85[EUR][1000 genomes]
rs28869007	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899228	0.85[EUR][1000 genomes]
rs4899229	0.85[EUR][1000 genomes]
rs4902529	0.85[EUR][1000 genomes]
rs4902530	0.85[EUR][1000 genomes]
rs4902531	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902532	0.85[EUR][1000 genomes]
rs4902534	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	1.00[ASN][1000 genomes]
rs73282485	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73284210	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003181	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008791	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8015741	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.85[EUR][1000 genomes]
rs8016563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8017930	0.85[EUR][1000 genomes]
rs8018883	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8019420	0.85[EUR][1000 genomes]
rs8020512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
2	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:68427400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:68428200-68432200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr14:68428600-68433400	Enhancers	Colon Smooth Muscle	Colon
6	chr14:68428600-68435000	Enhancers	Fetal Intestine Large	intestine
7	chr14:68428800-68433000	Enhancers	Rectal Smooth Muscle	rectum
8	chr14:68429200-68432400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:68429200-68433800	Weak transcription	Primary T cells from cord blood	blood
10	chr14:68429400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:68429400-68445200	Weak transcription	Ovary	ovary
12	chr14:68429600-68432400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:68429600-68444400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:68430000-68433800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:68430200-68433600	Enhancers	Fetal Intestine Small	intestine
16	chr14:68430400-68434400	Enhancers	Stomach Mucosa	stomach
17	chr14:68430600-68433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:68430600-68434600	Enhancers	Duodenum Mucosa	Duodenum
19	chr14:68430800-68432600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr14:68430800-68433000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr14:68430800-68433400	Enhancers	Fetal Stomach	stomach
22	chr14:68431000-68432000	Enhancers	Placenta	Placenta
23	chr14:68431000-68432400	Enhancers	Small Intestine	intestine
24	chr14:68431200-68432000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:68431200-68433600	Enhancers	Fetal Lung	lung
26	chr14:68431200-68434600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:68431400-68432000	Enhancers	Fetal Kidney	kidney
28	chr14:68431400-68432200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:68431400-68432200	Enhancers	Hela-S3	cervix
30	chr14:68431400-68432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:68431400-68432800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:68431400-68433400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr14:68431600-68432000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:68431800-68432000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr14:68431800-68432200	Enhancers	NHEK	skin
36	chr14:68431800-68432400	Enhancers	HMEC	breast
37	chr14:68431800-68432600	Strong transcription	Primary B cells from cord blood	blood
38	chr14:68431800-68433200	Weak transcription	Dnd41	blood

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