Variant report

Variant	rs28896907
Chromosome Location	chr14:68415719-68415720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68408062..68409721-chr14:68415116..68416727,2	MCF-7	breast:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10130605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	1.00[ASN][1000 genomes]
rs10131828	1.00[ASN][1000 genomes]
rs10132711	1.00[ASN][1000 genomes]
rs10132828	1.00[ASN][1000 genomes]
rs10133485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134988	0.85[EUR][1000 genomes]
rs10135316	1.00[ASN][1000 genomes]
rs10135925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	1.00[ASN][1000 genomes]
rs10137712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.98[ASN][1000 genomes]
rs10142285	1.00[ASN][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	1.00[ASN][1000 genomes]
rs10143895	1.00[ASN][1000 genomes]
rs10144128	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	1.00[ASN][1000 genomes]
rs10146189	1.00[ASN][1000 genomes]
rs10146719	0.98[ASN][1000 genomes]
rs10146766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[ASN][1000 genomes]
rs10147820	1.00[ASN][1000 genomes]
rs10148893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	1.00[ASN][1000 genomes]
rs10151317	1.00[ASN][1000 genomes]
rs10450891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	1.00[ASN][1000 genomes]
rs1118397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[ASN][1000 genomes]
rs17104824	1.00[ASN][1000 genomes]
rs17104827	1.00[ASN][1000 genomes]
rs17104829	1.00[ASN][1000 genomes]
rs17104862	0.92[ASN][1000 genomes]
rs17104863	0.92[ASN][1000 genomes]
rs17783202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.98[ASN][1000 genomes]
rs2180537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28405326	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473357	0.85[EUR][1000 genomes]
rs28516665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	1.00[ASN][1000 genomes]
rs28751961	1.00[EUR][1000 genomes]
rs28757308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	1.00[EUR][1000 genomes]
rs28835585	1.00[EUR][1000 genomes]
rs28847917	1.00[EUR][1000 genomes]
rs28869007	1.00[ASN][1000 genomes]
rs34700596	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	1.00[EUR][1000 genomes]
rs4899229	1.00[EUR][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.93[EUR][1000 genomes]
rs4902529	1.00[EUR][1000 genomes]
rs4902530	1.00[EUR][1000 genomes]
rs4902531	1.00[EUR][1000 genomes]
rs4902532	1.00[EUR][1000 genomes]
rs4902534	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.92[ASN][1000 genomes]
rs7140987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	1.00[EUR][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	1.00[ASN][1000 genomes]
rs7157550	1.00[ASN][1000 genomes]
rs7157720	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs8003181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	1.00[EUR][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	1.00[EUR][1000 genomes]
rs8016563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	1.00[EUR][1000 genomes]
rs8017930	1.00[EUR][1000 genomes]
rs8018883	1.00[EUR][1000 genomes]
rs8019420	1.00[EUR][1000 genomes]
rs8020512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	1.00[ASN][1000 genomes]
rs9652362	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	1.00[ASN][1000 genomes]
rs9796374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68420200	Weak transcription	Ovary	ovary
2	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
4	chr14:68409400-68415800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:68409400-68416800	Weak transcription	Aorta	Aorta
6	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:68412000-68421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
10	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
11	chr14:68412200-68416200	Weak transcription	Fetal Lung	lung
12	chr14:68414600-68416600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:68415400-68416000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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