Variant report

Variant	rs4899226
Chromosome Location	chr14:68311872-68311873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10130605	0.92[EUR][1000 genomes]
rs10130837	0.92[EUR][1000 genomes]
rs10133485	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10133652	0.92[EUR][1000 genomes]
rs10134988	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10135925	0.92[EUR][1000 genomes]
rs10137712	0.92[EUR][1000 genomes]
rs10142687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10146766	0.92[EUR][1000 genomes]
rs10146831	0.92[EUR][1000 genomes]
rs10148893	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10150330	0.92[EUR][1000 genomes]
rs10450891	0.92[EUR][1000 genomes]
rs10467819	0.92[EUR][1000 genomes]
rs1073025	0.92[EUR][1000 genomes]
rs1073026	0.92[EUR][1000 genomes]
rs1118397	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17104758	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17104774	0.92[EUR][1000 genomes]
rs17104783	0.92[EUR][1000 genomes]
rs17104786	0.92[EUR][1000 genomes]
rs17104793	0.92[EUR][1000 genomes]
rs17104796	0.92[EUR][1000 genomes]
rs17104799	0.92[EUR][1000 genomes]
rs17783202	0.92[EUR][1000 genomes]
rs2180537	0.92[EUR][1000 genomes]
rs28396172	0.92[EUR][1000 genomes]
rs28405326	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28434770	0.92[EUR][1000 genomes]
rs28444090	0.92[EUR][1000 genomes]
rs28473357	0.92[EUR][1000 genomes]
rs28516665	0.92[EUR][1000 genomes]
rs28701947	0.92[EUR][1000 genomes]
rs28751961	0.92[EUR][1000 genomes]
rs28757308	0.92[EUR][1000 genomes]
rs28816808	0.92[EUR][1000 genomes]
rs28833913	0.92[EUR][1000 genomes]
rs28835585	0.92[EUR][1000 genomes]
rs28847917	0.92[EUR][1000 genomes]
rs28896907	0.92[EUR][1000 genomes]
rs34700596	0.92[EUR][1000 genomes]
rs35608268	0.92[EUR][1000 genomes]
rs3742885	0.92[ASN][1000 genomes]
rs4899228	0.92[EUR][1000 genomes]
rs4899229	0.92[EUR][1000 genomes]
rs4902523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902525	0.85[EUR][1000 genomes]
rs4902529	0.92[EUR][1000 genomes]
rs4902530	0.92[EUR][1000 genomes]
rs4902531	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4902532	0.92[EUR][1000 genomes]
rs4902534	0.92[EUR][1000 genomes]
rs4902537	0.92[EUR][1000 genomes]
rs60014063	0.92[EUR][1000 genomes]
rs6573802	0.92[EUR][1000 genomes]
rs7140987	0.92[EUR][1000 genomes]
rs7147296	0.92[EUR][1000 genomes]
rs7149122	0.92[EUR][1000 genomes]
rs7149360	0.92[EUR][1000 genomes]
rs7149460	0.92[EUR][1000 genomes]
rs7149796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7150467	0.92[EUR][1000 genomes]
rs7150860	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7151035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152445	0.92[EUR][1000 genomes]
rs7152727	0.92[EUR][1000 genomes]
rs7153470	0.92[EUR][1000 genomes]
rs8003181	0.92[EUR][1000 genomes]
rs8006175	0.92[EUR][1000 genomes]
rs8007989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008791	0.92[EUR][1000 genomes]
rs8014844	0.92[EUR][1000 genomes]
rs8015520	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs8015595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015741	0.92[EUR][1000 genomes]
rs8016246	0.92[EUR][1000 genomes]
rs8016563	0.92[EUR][1000 genomes]
rs8017718	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs8017930	0.92[EUR][1000 genomes]
rs8018883	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs8019420	0.92[EUR][1000 genomes]
rs8020512	0.92[EUR][1000 genomes]
rs9652362	0.92[EUR][1000 genomes]
rs9652364	0.92[EUR][1000 genomes]
rs9796374	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287400-68312800	Weak transcription	Aorta	Aorta
2	chr14:68287400-68312800	Weak transcription	Esophagus	oesophagus
3	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
5	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:68291400-68312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68294200-68315000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
9	chr14:68294400-68312400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:68294600-68312000	Weak transcription	Fetal Stomach	stomach
11	chr14:68294600-68312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:68294600-68318200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:68294800-68312800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:68298200-68312800	Weak transcription	Primary T cells from cord blood	blood
15	chr14:68300600-68312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:68301800-68312800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:68303000-68315000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:68303200-68315000	Weak transcription	Primary B cells from cord blood	blood
20	chr14:68303200-68318200	Weak transcription	Ovary	ovary
21	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr14:68303400-68312000	Weak transcription	Fetal Intestine Small	intestine
23	chr14:68303800-68312800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:68305000-68312600	Weak transcription	Dnd41	blood
25	chr14:68305200-68312800	Weak transcription	Pancreas	Pancrea
26	chr14:68310600-68312000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:68311000-68316000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:68311400-68325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:68311600-68312000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr14:68311600-68313000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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