Variant report

Variant	rs10467819
Chromosome Location	chr14:68374615-68374616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr14:68374443-68374650	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RAD51B	TF binding region

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10130605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	1.00[ASN][1000 genomes]
rs10132711	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	1.00[ASN][1000 genomes]
rs10133485	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134988	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10135316	1.00[ASN][1000 genomes]
rs10135925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10142285	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	1.00[ASN][1000 genomes]
rs10143895	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	1.00[ASN][1000 genomes]
rs10146189	1.00[ASN][1000 genomes]
rs10146719	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[ASN][1000 genomes]
rs10147820	1.00[ASN][1000 genomes]
rs10148893	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	1.00[ASN][1000 genomes]
rs10450891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[ASN][1000 genomes]
rs17104824	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	1.00[ASN][1000 genomes]
rs17104829	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17783202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.98[ASN][1000 genomes]
rs2180537	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28405326	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473357	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28516665	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	1.00[ASN][1000 genomes]
rs28751961	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28835585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28847917	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28869007	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902531	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4902532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902534	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs8003181	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8017930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018883	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8019420	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020512	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68365800-68374800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:68368400-68382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68374600-68375200	Enhancers	Ovary	ovary
4	chr14:68374600-68375600	Enhancers	Fetal Muscle Leg	muscle

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