Variant report

Variant	rs28751961
Chromosome Location	chr14:68340870-68340871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10130605	1.00[EUR][1000 genomes]
rs10130837	1.00[EUR][1000 genomes]
rs10130997	0.80[AFR][1000 genomes]
rs10131022	0.80[AFR][1000 genomes]
rs10132711	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133485	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10133652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134763	0.80[AFR][1000 genomes]
rs10134988	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	1.00[EUR][1000 genomes]
rs10137457	0.80[AFR][1000 genomes]
rs10137712	1.00[EUR][1000 genomes]
rs10138719	0.80[AFR][1000 genomes]
rs10142285	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143895	0.80[AFR][1000 genomes]
rs10144128	0.85[EUR][1000 genomes]
rs10145884	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10146719	0.80[AFR][1000 genomes]
rs10146766	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146831	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147052	0.80[AFR][1000 genomes]
rs10148893	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10150330	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151123	0.80[AFR][1000 genomes]
rs10450891	1.00[EUR][1000 genomes]
rs10467819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1073024	0.86[EUR][1000 genomes]
rs1073025	1.00[EUR][1000 genomes]
rs1073026	1.00[EUR][1000 genomes]
rs11158710	0.80[AFR][1000 genomes]
rs1118397	1.00[EUR][1000 genomes]
rs17104663	0.89[ASN][1000 genomes]
rs17104681	0.96[ASN][1000 genomes]
rs17104689	0.96[ASN][1000 genomes]
rs17104700	0.96[ASN][1000 genomes]
rs17104758	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104774	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104783	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104793	1.00[EUR][1000 genomes]
rs17104796	1.00[EUR][1000 genomes]
rs17104799	1.00[EUR][1000 genomes]
rs17104824	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104829	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104862	0.80[AFR][1000 genomes]
rs17104863	0.80[AFR][1000 genomes]
rs17783202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2180537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28396172	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	1.00[EUR][1000 genomes]
rs28434770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28444090	1.00[EUR][1000 genomes]
rs28473357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516665	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28697984	0.89[ASN][1000 genomes]
rs28701947	1.00[EUR][1000 genomes]
rs28757308	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28816808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28833913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28835585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28847917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28869007	0.80[AFR][1000 genomes]
rs28896907	1.00[EUR][1000 genomes]
rs34057001	0.80[AFR][1000 genomes]
rs34663731	0.96[ASN][1000 genomes]
rs34700596	1.00[EUR][1000 genomes]
rs34768780	0.96[ASN][1000 genomes]
rs34787467	0.96[ASN][1000 genomes]
rs35010674	0.80[AFR][1000 genomes]
rs35588855	0.96[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs35927243	0.96[ASN][1000 genomes]
rs3742884	0.89[ASN][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902531	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902537	1.00[EUR][1000 genomes]
rs4902541	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902543	0.85[EUR][1000 genomes]
rs58159602	0.89[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes]
rs6573802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573806	0.80[AFR][1000 genomes]
rs7140987	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141203	0.96[ASN][1000 genomes]
rs7143377	0.96[ASN][1000 genomes]
rs7143521	0.96[ASN][1000 genomes]
rs7145385	0.80[AFR][1000 genomes]
rs7147296	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149122	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149351	0.96[ASN][1000 genomes]
rs7149356	0.96[ASN][1000 genomes]
rs7149360	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150860	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152727	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156492	0.89[ASN][1000 genomes]
rs7157550	0.80[AFR][1000 genomes]
rs7157720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7159786	0.96[ASN][1000 genomes]
rs8003181	1.00[EUR][1000 genomes]
rs8006175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	1.00[EUR][1000 genomes]
rs8010136	0.80[AFR][1000 genomes]
rs8012665	0.89[ASN][1000 genomes]
rs8014844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015427	0.80[AFR][1000 genomes]
rs8015520	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015609	0.80[AFR][1000 genomes]
rs8015741	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016563	1.00[EUR][1000 genomes]
rs8017718	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8017930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018161	0.80[AFR][1000 genomes]
rs8018528	0.80[AFR][1000 genomes]
rs8018883	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8019420	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8020512	1.00[EUR][1000 genomes]
rs8023116	0.80[AFR][1000 genomes]
rs957930	0.80[AFR][1000 genomes]
rs9652362	1.00[EUR][1000 genomes]
rs9652363	0.84[EUR][1000 genomes]
rs9652364	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672111	0.80[AFR][1000 genomes]
rs9796374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:68334200-68348200	Weak transcription	Lung	lung
5	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68335200-68343400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68335200-68348000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:68338000-68341400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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