Variant report

Variant	rs8015609
Chromosome Location	chr14:68313813-68313814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10131022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133699	1.00[EUR][1000 genomes]
rs10134763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135963	1.00[EUR][1000 genomes]
rs10136738	1.00[EUR][1000 genomes]
rs10139064	1.00[EUR][1000 genomes]
rs10139482	1.00[EUR][1000 genomes]
rs10142186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145923	1.00[EUR][1000 genomes]
rs10145933	1.00[EUR][1000 genomes]
rs10146242	1.00[EUR][1000 genomes]
rs10147052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147145	1.00[EUR][1000 genomes]
rs10150532	1.00[EUR][1000 genomes]
rs17104527	1.00[EUR][1000 genomes]
rs17104547	1.00[EUR][1000 genomes]
rs17104587	1.00[EUR][1000 genomes]
rs17104591	1.00[EUR][1000 genomes]
rs17104697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2234512	1.00[EUR][1000 genomes]
rs2295109	1.00[EUR][1000 genomes]
rs2295110	1.00[EUR][1000 genomes]
rs28396172	0.99[AFR][1000 genomes]
rs28451245	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28556682	1.00[EUR][1000 genomes]
rs28751961	0.80[AFR][1000 genomes]
rs28780734	1.00[EUR][1000 genomes]
rs28784083	1.00[EUR][1000 genomes]
rs28817410	1.00[EUR][1000 genomes]
rs28833913	0.80[AFR][1000 genomes]
rs28835585	0.80[AFR][1000 genomes]
rs28844401	1.00[EUR][1000 genomes]
rs34057001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35010674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4272963	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899218	1.00[EUR][1000 genomes]
rs4899228	0.80[AFR][1000 genomes]
rs4899229	0.80[AFR][1000 genomes]
rs4902510	1.00[EUR][1000 genomes]
rs4902516	1.00[EUR][1000 genomes]
rs4902522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902525	0.83[AFR][1000 genomes]
rs4902529	0.80[AFR][1000 genomes]
rs4902530	0.80[AFR][1000 genomes]
rs4902532	0.80[AFR][1000 genomes]
rs57023353	1.00[EUR][1000 genomes]
rs57348219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58112975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58952057	1.00[EUR][1000 genomes]
rs59945885	1.00[EUR][1000 genomes]
rs7143223	1.00[EUR][1000 genomes]
rs7143483	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144698	1.00[EUR][1000 genomes]
rs7145385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149669	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156195	1.00[EUR][1000 genomes]
rs7157699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7359109	1.00[EUR][1000 genomes]
rs7765	1.00[EUR][1000 genomes]
rs8005494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007916	1.00[EUR][1000 genomes]
rs8009762	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8010136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016246	0.80[AFR][1000 genomes]
rs8017930	0.80[AFR][1000 genomes]
rs8018161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
3	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:68294200-68315000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
6	chr14:68294600-68318200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:68303000-68315000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:68303200-68315000	Weak transcription	Primary B cells from cord blood	blood
10	chr14:68303200-68318200	Weak transcription	Ovary	ovary
11	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:68311000-68316000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:68311400-68325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:68312600-68314000	ZNF genes & repeats	Dnd41	blood
15	chr14:68312800-68315800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr14:68313200-68314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68313200-68318000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:68313200-68324400	Weak transcription	Gastric	stomach
19	chr14:68313200-68326400	Weak transcription	Pancreas	Pancrea
20	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
22	chr14:68313400-68322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:68313800-68320600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:68313800-68324600	Weak transcription	Esophagus	oesophagus

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