Variant report

Variant	rs4902522
Chromosome Location	chr14:68294656-68294657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10131022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133699	1.00[EUR][1000 genomes]
rs10134763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134988	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135963	1.00[EUR][1000 genomes]
rs10136738	1.00[EUR][1000 genomes]
rs10139064	1.00[EUR][1000 genomes]
rs10139482	1.00[EUR][1000 genomes]
rs10142186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145923	1.00[EUR][1000 genomes]
rs10145933	1.00[EUR][1000 genomes]
rs10146242	1.00[EUR][1000 genomes]
rs10147052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147145	1.00[EUR][1000 genomes]
rs10150532	1.00[EUR][1000 genomes]
rs17104527	1.00[EUR][1000 genomes]
rs17104547	1.00[EUR][1000 genomes]
rs17104587	1.00[EUR][1000 genomes]
rs17104591	1.00[EUR][1000 genomes]
rs17104697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2234512	1.00[EUR][1000 genomes]
rs2295109	1.00[EUR][1000 genomes]
rs2295110	1.00[EUR][1000 genomes]
rs28396172	0.96[AFR][1000 genomes]
rs28451245	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28479359	0.82[AFR][1000 genomes]
rs28556682	1.00[EUR][1000 genomes]
rs28780734	1.00[EUR][1000 genomes]
rs28784083	1.00[EUR][1000 genomes]
rs28817410	1.00[EUR][1000 genomes]
rs28844401	1.00[EUR][1000 genomes]
rs34057001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35010674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4272963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899218	1.00[EUR][1000 genomes]
rs4902510	1.00[EUR][1000 genomes]
rs4902516	1.00[EUR][1000 genomes]
rs4902525	0.80[AFR][1000 genomes]
rs57023353	1.00[EUR][1000 genomes]
rs57348219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58112975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58952057	1.00[EUR][1000 genomes]
rs59945885	1.00[EUR][1000 genomes]
rs7143223	1.00[EUR][1000 genomes]
rs7143483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144698	1.00[EUR][1000 genomes]
rs7145385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7156195	1.00[EUR][1000 genomes]
rs7157699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7359109	1.00[EUR][1000 genomes]
rs7765	1.00[EUR][1000 genomes]
rs8005494	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007916	1.00[EUR][1000 genomes]
rs8009762	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8010136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015427	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018161	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287200-68303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:68287400-68296400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:68287400-68297200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:68287400-68304800	Weak transcription	Lung	lung
5	chr14:68287400-68312800	Weak transcription	Aorta	Aorta
6	chr14:68287400-68312800	Weak transcription	Esophagus	oesophagus
7	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:68287600-68295000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:68287600-68295400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:68287600-68296000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:68287600-68298000	Weak transcription	Brain Anterior Caudate	brain
12	chr14:68287600-68301400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:68287600-68302800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:68287600-68303600	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:68287600-68303800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:68287600-68304800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:68287600-68306000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
19	chr14:68287800-68295200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:68287800-68295400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:68287800-68296200	Weak transcription	Brain Substantia Nigra	brain
22	chr14:68287800-68300600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:68287800-68304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr14:68287800-68305000	Weak transcription	Fetal Kidney	kidney
25	chr14:68287800-68306400	Weak transcription	Fetal Lung	lung
26	chr14:68287800-68310600	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:68288000-68295000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:68288000-68295400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:68288000-68296000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr14:68288000-68297200	Weak transcription	Primary T cells from cord blood	blood
32	chr14:68288000-68298800	Weak transcription	Adipose Nuclei	Adipose
33	chr14:68288000-68300200	Weak transcription	NHEK	skin
34	chr14:68288000-68306400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:68288000-68306400	Weak transcription	HepG2	liver
36	chr14:68288000-68306800	Weak transcription	A549	lung
37	chr14:68288200-68295800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr14:68288200-68298200	Weak transcription	HMEC	breast
39	chr14:68288200-68302400	Weak transcription	GM12878-XiMat	blood
40	chr14:68288200-68304000	Weak transcription	K562	blood
41	chr14:68288200-68306200	Weak transcription	NHDF-Ad	bronchial
42	chr14:68288400-68298200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:68288400-68303800	Weak transcription	Liver	Liver
44	chr14:68289600-68304800	Weak transcription	Fetal Intestine Large	intestine
45	chr14:68290600-68295000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:68290800-68294800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:68290800-68294800	Strong transcription	Fetal Thymus	thymus
48	chr14:68291000-68295600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:68291400-68312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr14:68291600-68303200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links