Variant report
Variant | rs28844401 |
---|---|
Chromosome Location | chr14:68176981-68176982 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CBX3 | chr14:68176929-68177374 | HCT-116 | colon: | n/a | n/a |
2 | POLR2A | chr14:68176799-68177010 | Hela-S3 | cervix: | n/a | n/a |
3 | KAP1 | chr14:68176894-68177333 | HEK293 | kidney: | n/a | n/a |
4 | KAP1 | chr14:68176933-68177325 | U2OS | brain: | n/a | n/a |
5 | SETDB1 | chr14:68176555-68177667 | U2OS | brain: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RPL21P9 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10130204 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10131022 | 1.00[EUR][1000 genomes] |
rs10133699 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs10134763 | 1.00[EUR][1000 genomes] |
rs10135963 | 1.00[EUR][1000 genomes] |
rs10136738 | 1.00[EUR][1000 genomes] |
rs10139064 | 1.00[EUR][1000 genomes] |
rs10139482 | 1.00[EUR][1000 genomes] |
rs10142186 | 1.00[EUR][1000 genomes] |
rs10145923 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs10145933 | 1.00[EUR][1000 genomes] |
rs10146242 | 1.00[EUR][1000 genomes] |
rs10147052 | 1.00[EUR][1000 genomes] |
rs10147145 | 1.00[EUR][1000 genomes] |
rs10150532 | 1.00[EUR][1000 genomes] |
rs17104527 | 1.00[EUR][1000 genomes] |
rs17104547 | 1.00[EUR][1000 genomes] |
rs17104587 | 1.00[EUR][1000 genomes] |
rs17104591 | 1.00[EUR][1000 genomes] |
rs17104697 | 1.00[EUR][1000 genomes] |
rs2234512 | 1.00[EUR][1000 genomes] |
rs2295109 | 1.00[EUR][1000 genomes] |
rs2295110 | 1.00[EUR][1000 genomes] |
rs28451245 | 1.00[EUR][1000 genomes] |
rs28556682 | 1.00[EUR][1000 genomes] |
rs28780734 | 1.00[EUR][1000 genomes] |
rs28784083 | 1.00[EUR][1000 genomes] |
rs28817410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34057001 | 1.00[EUR][1000 genomes] |
rs35010674 | 1.00[EUR][1000 genomes] |
rs4272963 | 1.00[EUR][1000 genomes] |
rs4899218 | 1.00[EUR][1000 genomes] |
rs4902492 | 1.00[EUR][1000 genomes] |
rs4902510 | 1.00[EUR][1000 genomes] |
rs4902516 | 1.00[EUR][1000 genomes] |
rs4902522 | 1.00[EUR][1000 genomes] |
rs57023353 | 1.00[EUR][1000 genomes] |
rs57348219 | 1.00[EUR][1000 genomes] |
rs58112975 | 1.00[EUR][1000 genomes] |
rs58952057 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs59945885 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7143223 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7143483 | 1.00[EUR][1000 genomes] |
rs7144698 | 1.00[EUR][1000 genomes] |
rs7145385 | 1.00[EUR][1000 genomes] |
rs7149669 | 1.00[EUR][1000 genomes] |
rs7156195 | 1.00[EUR][1000 genomes] |
rs7157699 | 1.00[EUR][1000 genomes] |
rs7359109 | 1.00[EUR][1000 genomes] |
rs7765 | 1.00[EUR][1000 genomes] |
rs8007916 | 1.00[EUR][1000 genomes] |
rs8009762 | 1.00[EUR][1000 genomes] |
rs8010136 | 1.00[EUR][1000 genomes] |
rs8015609 | 1.00[EUR][1000 genomes] |
rs8018161 | 1.00[EUR][1000 genomes] |
rs8018528 | 1.00[EUR][1000 genomes] |
rs8023116 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv902068 | chr14:68083133-68204876 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
2 | nsv1042536 | chr14:68136913-68343198 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
3 | nsv542122 | chr14:68136913-68343198 | Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
4 | nsv521832 | chr14:68141009-68204876 | Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv976349 | chr14:68171328-68181608 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:68171800-68181600 | Weak transcription | K562 | blood |
2 | chr14:68175600-68177000 | Enhancers | Liver | Liver |
3 | chr14:68176200-68177000 | ZNF genes & repeats | Fetal Intestine Small | intestine |
4 | chr14:68176400-68177000 | Enhancers | Fetal Intestine Large | intestine |
5 | chr14:68176800-68177000 | Flanking Active TSS | Hela-S3 | cervix |