Variant report

Variant	rs7157699
Chromosome Location	chr14:68296900-68296901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10131022	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133652	0.84[ASW][hapmap];0.83[YRI][hapmap]
rs10133699	1.00[EUR][1000 genomes]
rs10134763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134988	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135963	1.00[EUR][1000 genomes]
rs10136738	1.00[EUR][1000 genomes]
rs10139064	1.00[EUR][1000 genomes]
rs10139482	1.00[EUR][1000 genomes]
rs10142186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143895	0.83[YRI][hapmap]
rs10145923	1.00[EUR][1000 genomes]
rs10145933	1.00[EUR][1000 genomes]
rs10146242	1.00[EUR][1000 genomes]
rs10146719	0.83[YRI][hapmap]
rs10147052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10147145	1.00[EUR][1000 genomes]
rs10150532	1.00[EUR][1000 genomes]
rs10151123	0.83[YRI][hapmap]
rs17104527	1.00[EUR][1000 genomes]
rs17104547	1.00[EUR][1000 genomes]
rs17104587	1.00[EUR][1000 genomes]
rs17104591	1.00[EUR][1000 genomes]
rs17104697	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104783	0.81[YRI][hapmap]
rs17104862	0.83[YRI][hapmap]
rs17783202	0.84[ASW][hapmap];0.83[YRI][hapmap]
rs2234512	1.00[EUR][1000 genomes]
rs2295109	1.00[EUR][1000 genomes]
rs2295110	1.00[EUR][1000 genomes]
rs28396172	0.93[AFR][1000 genomes]
rs28451245	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28556682	1.00[EUR][1000 genomes]
rs28780734	1.00[EUR][1000 genomes]
rs28784083	1.00[EUR][1000 genomes]
rs28817410	1.00[EUR][1000 genomes]
rs28844401	1.00[EUR][1000 genomes]
rs34057001	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35010674	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4272963	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899218	1.00[EUR][1000 genomes]
rs4899229	0.83[YRI][hapmap]
rs4902510	1.00[EUR][1000 genomes]
rs4902516	1.00[EUR][1000 genomes]
rs4902522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57023353	1.00[EUR][1000 genomes]
rs57348219	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58112975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58952057	1.00[EUR][1000 genomes]
rs59945885	1.00[EUR][1000 genomes]
rs6573802	0.83[YRI][hapmap]
rs7143223	1.00[EUR][1000 genomes]
rs7143483	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144698	1.00[EUR][1000 genomes]
rs7145385	1.00[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149460	0.81[YRI][hapmap]
rs7149669	0.82[ASW][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154725	0.83[YRI][hapmap]
rs7156195	1.00[EUR][1000 genomes]
rs7157550	0.83[YRI][hapmap]
rs7359109	1.00[EUR][1000 genomes]
rs7765	1.00[EUR][1000 genomes]
rs8005494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006175	0.82[YRI][hapmap]
rs8007916	1.00[EUR][1000 genomes]
rs8009762	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8010136	1.00[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015427	0.82[ASW][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015609	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017930	0.83[YRI][hapmap]
rs8018161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018528	1.00[ASW][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023116	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672111	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287200-68303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:68287400-68297200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68287400-68304800	Weak transcription	Lung	lung
4	chr14:68287400-68312800	Weak transcription	Aorta	Aorta
5	chr14:68287400-68312800	Weak transcription	Esophagus	oesophagus
6	chr14:68287400-68315200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:68287600-68298000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:68287600-68301400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:68287600-68302800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:68287600-68303600	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68287600-68303800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:68287600-68304800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:68287600-68306000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
15	chr14:68287800-68300600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:68287800-68304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:68287800-68305000	Weak transcription	Fetal Kidney	kidney
18	chr14:68287800-68306400	Weak transcription	Fetal Lung	lung
19	chr14:68287800-68310600	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:68288000-68297200	Weak transcription	Primary T cells from cord blood	blood
22	chr14:68288000-68298800	Weak transcription	Adipose Nuclei	Adipose
23	chr14:68288000-68300200	Weak transcription	NHEK	skin
24	chr14:68288000-68306400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:68288000-68306400	Weak transcription	HepG2	liver
26	chr14:68288000-68306800	Weak transcription	A549	lung
27	chr14:68288200-68298200	Weak transcription	HMEC	breast
28	chr14:68288200-68302400	Weak transcription	GM12878-XiMat	blood
29	chr14:68288200-68304000	Weak transcription	K562	blood
30	chr14:68288200-68306200	Weak transcription	NHDF-Ad	bronchial
31	chr14:68288400-68298200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr14:68288400-68303800	Weak transcription	Liver	Liver
33	chr14:68289600-68304800	Weak transcription	Fetal Intestine Large	intestine
34	chr14:68291400-68312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:68291600-68303200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:68292200-68300400	Weak transcription	Left Ventricle	heart
37	chr14:68293800-68300200	Weak transcription	Primary B cells from cord blood	blood
38	chr14:68293800-68301800	Weak transcription	Fetal Intestine Small	intestine
39	chr14:68293800-68302400	Weak transcription	Thymus	Thymus
40	chr14:68294000-68303000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr14:68294200-68300400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr14:68294200-68304600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:68294200-68315000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
45	chr14:68294400-68303200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr14:68294400-68304400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr14:68294400-68304600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:68294400-68306400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:68294400-68312400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:68294600-68300800	Weak transcription	Ovary	ovary

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