Variant report

Variant	rs10134988
Chromosome Location	chr14:68325503-68325504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68324608..68326909-chr14:69260185..69262746,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10130605	0.85[EUR][1000 genomes]
rs10130837	0.85[EUR][1000 genomes]
rs10131022	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10133485	0.85[EUR][1000 genomes]
rs10133652	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10134763	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135925	0.85[EUR][1000 genomes]
rs10137712	0.85[EUR][1000 genomes]
rs10142186	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142687	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10142929	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10145884	0.85[EUR][1000 genomes]
rs10146766	0.85[EUR][1000 genomes]
rs10146831	0.85[EUR][1000 genomes]
rs10147052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148893	0.85[EUR][1000 genomes]
rs10150330	0.85[EUR][1000 genomes]
rs10450891	0.85[EUR][1000 genomes]
rs10467819	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1073025	0.85[EUR][1000 genomes]
rs1073026	0.85[EUR][1000 genomes]
rs1118397	0.85[EUR][1000 genomes]
rs17104663	0.89[ASN][1000 genomes]
rs17104681	0.96[ASN][1000 genomes]
rs17104689	0.96[ASN][1000 genomes]
rs17104697	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104700	0.96[ASN][1000 genomes]
rs17104758	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17104774	0.85[EUR][1000 genomes]
rs17104783	0.85[EUR][1000 genomes]
rs17104786	0.85[EUR][1000 genomes]
rs17104793	0.85[EUR][1000 genomes]
rs17104796	0.85[EUR][1000 genomes]
rs17104799	0.85[EUR][1000 genomes]
rs17783202	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2180537	0.85[EUR][1000 genomes]
rs28396172	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28405326	0.85[EUR][1000 genomes]
rs28434770	0.85[EUR][1000 genomes]
rs28444090	0.85[EUR][1000 genomes]
rs28451245	0.83[AFR][1000 genomes]
rs28473357	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516665	0.85[EUR][1000 genomes]
rs28697984	0.89[ASN][1000 genomes]
rs28701947	0.85[EUR][1000 genomes]
rs28751961	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28757308	0.85[EUR][1000 genomes]
rs28816808	0.85[EUR][1000 genomes]
rs28833913	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28835585	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28847917	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28896907	0.85[EUR][1000 genomes]
rs34057001	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34663731	0.96[ASN][1000 genomes]
rs34700596	0.85[EUR][1000 genomes]
rs34768780	0.96[ASN][1000 genomes]
rs34787467	0.96[ASN][1000 genomes]
rs35010674	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35588855	0.96[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs35927243	0.96[ASN][1000 genomes]
rs3742884	0.89[ASN][1000 genomes]
rs4272963	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899226	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4899228	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899229	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902522	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902523	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4902525	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4902529	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902530	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902531	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902532	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902534	0.85[EUR][1000 genomes]
rs4902537	0.85[EUR][1000 genomes]
rs57348219	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58112975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58159602	0.89[ASN][1000 genomes]
rs60014063	0.85[EUR][1000 genomes]
rs6573802	0.85[EUR][1000 genomes]
rs7140987	0.85[EUR][1000 genomes]
rs7141203	0.96[ASN][1000 genomes]
rs7143377	0.96[ASN][1000 genomes]
rs7143483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143521	0.96[ASN][1000 genomes]
rs7145385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147296	0.85[EUR][1000 genomes]
rs7149122	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149351	0.96[ASN][1000 genomes]
rs7149356	0.96[ASN][1000 genomes]
rs7149360	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149460	0.85[EUR][1000 genomes]
rs7149669	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149796	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150860	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151035	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152727	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153470	0.85[EUR][1000 genomes]
rs7156492	0.89[ASN][1000 genomes]
rs7157699	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159786	0.96[ASN][1000 genomes]
rs8003181	0.85[EUR][1000 genomes]
rs8005494	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8006175	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8007989	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs8008791	0.85[EUR][1000 genomes]
rs8009762	0.84[AFR][1000 genomes]
rs8010136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012665	0.89[ASN][1000 genomes]
rs8014844	0.85[EUR][1000 genomes]
rs8015427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015520	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015595	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs8015609	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015741	0.85[EUR][1000 genomes]
rs8016246	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016563	0.85[EUR][1000 genomes]
rs8017718	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8017930	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018528	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018883	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8019420	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8020512	0.85[EUR][1000 genomes]
rs8023116	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652362	0.85[EUR][1000 genomes]
rs9652364	0.85[EUR][1000 genomes]
rs9796374	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:68311400-68325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:68313200-68326400	Weak transcription	Pancreas	Pancrea
5	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68314000-68331400	Weak transcription	Dnd41	blood
8	chr14:68318600-68334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:68319000-68327600	Weak transcription	Ovary	ovary
10	chr14:68319200-68326400	Weak transcription	Spleen	Spleen
11	chr14:68319200-68334200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:68320800-68338600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:68321000-68325800	Weak transcription	GM12878-XiMat	blood
14	chr14:68321000-68334000	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68321200-68334400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:68321400-68334200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:68322400-68332600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:68322600-68334800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:68324000-68335600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:68324400-68325600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:68324600-68332400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:68324600-68333800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:68325000-68326000	Enhancers	Stomach Mucosa	stomach
25	chr14:68325000-68334400	Weak transcription	Fetal Intestine Small	intestine
26	chr14:68325200-68326600	Enhancers	HUVEC	blood vessel
27	chr14:68325200-68331800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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