Variant report

Variant	rs28434770
Chromosome Location	chr14:68385655-68385656
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68379836..68381717-chr14:68383217..68385933,2	MCF-7	breast:
2	chr14:68383851..68386785-chr14:68386997..68389366,2	K562	blood:

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10130605	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10133485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134664	0.86[AFR][1000 genomes]
rs10134988	0.85[EUR][1000 genomes]
rs10135046	0.86[AFR][1000 genomes]
rs10135256	0.82[AFR][1000 genomes]
rs10135316	1.00[ASN][1000 genomes]
rs10135925	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10140465	0.86[AFR][1000 genomes]
rs10142285	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	1.00[ASN][1000 genomes]
rs10143895	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144224	0.82[AFR][1000 genomes]
rs10145884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	1.00[ASN][1000 genomes]
rs10146189	1.00[ASN][1000 genomes]
rs10146719	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[ASN][1000 genomes]
rs10147820	1.00[ASN][1000 genomes]
rs10148893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150789	0.87[AFR][1000 genomes]
rs10151123	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	1.00[ASN][1000 genomes]
rs10450891	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[ASN][1000 genomes]
rs17104824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	1.00[ASN][1000 genomes]
rs17104829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104880	0.89[AFR][1000 genomes]
rs17104900	0.86[AFR][1000 genomes]
rs17783202	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.98[ASN][1000 genomes]
rs2180537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28405326	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28444090	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448732	0.83[AFR][1000 genomes]
rs28473357	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28516665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701947	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	1.00[ASN][1000 genomes]
rs28751961	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28835585	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28847917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28869007	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899229	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902529	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902530	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902531	1.00[EUR][1000 genomes]
rs4902532	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	1.00[EUR][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs8003181	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	1.00[EUR][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016563	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	1.00[EUR][1000 genomes]
rs8017930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018029	0.85[AFR][1000 genomes]
rs8018883	1.00[EUR][1000 genomes]
rs8019420	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020512	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68382200-68388400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:68383200-68385800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:68383800-68385800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:68385000-68386400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr14:68385200-68386400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:68385200-68388200	Enhancers	Fetal Stomach	stomach
7	chr14:68385400-68385800	Enhancers	Fetal Kidney	kidney
8	chr14:68385400-68385800	Enhancers	NH-A	brain
9	chr14:68385400-68386600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:68385400-68386600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:68385400-68386600	Enhancers	Fetal Lung	lung
12	chr14:68385400-68386800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:68385600-68386000	Enhancers	Colon Smooth Muscle	Colon
14	chr14:68385600-68386400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:68385600-68386400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:68385600-68386400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr14:68385600-68386600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr14:68385600-68386800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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