Variant report

Variant	rs28701947
Chromosome Location	chr14:68426334-68426335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68424600..68427431-chr14:68428882..68430804,3	MCF-7	breast:
2	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
3	chr14:68425055..68428932-chr14:69256531..69260317,3	MCF-7	breast:
4	chr14:68412401..68415259-chr14:68423760..68426375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10130605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130997	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10131828	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132711	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10132828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133485	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134988	0.85[EUR][1000 genomes]
rs10135316	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10137712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10138719	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10142285	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10142687	0.92[EUR][1000 genomes]
rs10142929	0.92[EUR][1000 genomes]
rs10143219	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10143895	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10144128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145884	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146719	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10146766	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146831	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147569	1.00[ASN][1000 genomes]
rs10147820	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10148893	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150330	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10151317	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10450891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073024	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073025	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073026	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1118397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104758	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104783	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104786	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104793	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104796	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	1.00[ASN][1000 genomes]
rs17104824	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104829	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17104862	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104863	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17104880	0.81[AFR][1000 genomes]
rs17783202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950766	0.98[ASN][1000 genomes]
rs2180537	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396172	0.85[EUR][1000 genomes]
rs28405326	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28434770	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28444090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473357	0.85[EUR][1000 genomes]
rs28516665	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28751570	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28751961	1.00[EUR][1000 genomes]
rs28757308	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28816808	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833913	1.00[EUR][1000 genomes]
rs28835585	1.00[EUR][1000 genomes]
rs28847917	1.00[EUR][1000 genomes]
rs28869007	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28896907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35608268	0.84[EUR][1000 genomes]
rs4899226	0.92[EUR][1000 genomes]
rs4899228	1.00[EUR][1000 genomes]
rs4899229	1.00[EUR][1000 genomes]
rs4902523	0.92[EUR][1000 genomes]
rs4902525	0.93[EUR][1000 genomes]
rs4902529	1.00[EUR][1000 genomes]
rs4902530	1.00[EUR][1000 genomes]
rs4902531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902532	1.00[EUR][1000 genomes]
rs4902534	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902541	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573806	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7140987	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149122	0.84[EUR][1000 genomes]
rs7149360	0.84[EUR][1000 genomes]
rs7149460	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149796	0.92[EUR][1000 genomes]
rs7150467	0.84[EUR][1000 genomes]
rs7150860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151035	0.92[EUR][1000 genomes]
rs7152445	0.84[EUR][1000 genomes]
rs7152727	0.84[EUR][1000 genomes]
rs7153470	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154725	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7157720	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282485	1.00[ASN][1000 genomes]
rs73284210	0.98[ASN][1000 genomes]
rs8003181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007989	0.92[EUR][1000 genomes]
rs8008791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014844	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015595	0.92[EUR][1000 genomes]
rs8015741	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016246	1.00[EUR][1000 genomes]
rs8016563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017930	1.00[EUR][1000 genomes]
rs8018883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019420	1.00[EUR][1000 genomes]
rs8020512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652364	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672111	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9796374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
6	chr14:68417400-68428200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68420400-68427400	Weak transcription	Ovary	ovary
8	chr14:68420800-68428200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68424200-68427000	Weak transcription	Stomach Mucosa	stomach
10	chr14:68424200-68427400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:68425200-68428600	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:68425400-68427800	Weak transcription	Fetal Stomach	stomach
13	chr14:68425400-68428800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:68425600-68426400	Weak transcription	Fetal Lung	lung

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