Variant report

Variant	rs17104880
Chromosome Location	chr14:68517226-68517227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 167 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.90[JPT][hapmap]
rs10130997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131828	0.81[AFR][1000 genomes]
rs10132022	0.81[JPT][hapmap]
rs10132711	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AFR][1000 genomes]
rs10132828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs10133485	1.00[CEU][hapmap]
rs10133652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap]
rs10134124	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10134320	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10134664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs10135925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs10137330	0.86[ASN][1000 genomes]
rs10137457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10138719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139236	0.82[JPT][hapmap]
rs10139386	0.82[JPT][hapmap]
rs10140465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10141018	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10142285	0.94[AFR][1000 genomes]
rs10143219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap]
rs10143455	0.81[JPT][hapmap]
rs10143895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs10144224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145197	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10145820	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs10146719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10146831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs10147311	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10147569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10148893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs10149801	0.82[ASN][1000 genomes]
rs10150330	0.91[AFR][1000 genomes]
rs10150584	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10150789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10151123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs10450891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap]
rs1080958	0.82[JPT][hapmap]
rs10873211	0.86[ASN][1000 genomes]
rs10873212	0.86[ASN][1000 genomes]
rs11158710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11158719	0.81[JPT][hapmap]
rs11158720	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11158721	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1118397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.81[JPT][hapmap]
rs11623467	0.81[JPT][hapmap]
rs11844842	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11847339	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11849196	0.86[ASN][1000 genomes]
rs11851597	0.86[ASN][1000 genomes]
rs11851991	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12437178	0.81[JPT][hapmap]
rs1548264	0.82[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17104783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17104786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17104793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs17104796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs17104799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs17104823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17104824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17104827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs17104829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17104862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17104863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17104889	0.81[JPT][hapmap]
rs17104900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104908	0.81[JPT][hapmap]
rs17104917	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104947	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104953	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104992	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17105001	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17783202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap]
rs1950766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1951411	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1980654	0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2180537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2208596	0.81[JPT][hapmap]
rs28372014	0.83[ASN][1000 genomes]
rs28434770	0.89[AFR][1000 genomes]
rs28444090	0.81[AFR][1000 genomes]
rs28448732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28516665	0.91[AFR][1000 genomes]
rs28701947	0.81[AFR][1000 genomes]
rs28716846	0.92[ASN][1000 genomes]
rs28757308	0.91[AFR][1000 genomes]
rs28816808	0.91[AFR][1000 genomes]
rs28869007	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34370899	0.86[ASN][1000 genomes]
rs4899229	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs4902523	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs4902530	1.00[CEU][hapmap]
rs4902531	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs4902534	0.89[AFR][1000 genomes]
rs4902541	0.94[AFR][1000 genomes]
rs4902548	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4902550	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs60562079	0.86[ASN][1000 genomes]
rs60841871	0.86[ASN][1000 genomes]
rs6573802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs6573805	0.81[JPT][hapmap]
rs6573806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6573815	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6573816	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7140987	0.94[AFR][1000 genomes]
rs7145089	0.86[ASN][1000 genomes]
rs7147296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7147522	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7147935	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7148799	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7149343	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7149460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7150168	0.81[JPT][hapmap]
rs7150716	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7150860	1.00[CEU][hapmap]
rs7153470	0.91[AFR][1000 genomes]
rs7153978	0.86[ASN][1000 genomes]
rs7154228	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7154645	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7154725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155152	0.86[ASN][1000 genomes]
rs7157152	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7157550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7158544	0.81[JPT][hapmap]
rs7160068	0.86[ASN][1000 genomes]
rs7161070	0.92[ASN][1000 genomes]
rs73286292	0.86[ASN][1000 genomes]
rs7359083	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8003181	0.87[AFR][1000 genomes]
rs8006175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap]
rs8007347	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8008413	0.86[ASN][1000 genomes]
rs8008791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs8011367	0.86[ASN][1000 genomes]
rs8012493	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs8013061	0.86[ASN][1000 genomes]
rs8014000	0.81[JPT][hapmap]
rs8014844	0.91[AFR][1000 genomes]
rs8015741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs8017930	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs8018029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs8020795	0.81[JPT][hapmap]
rs957930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs9652363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs9652364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9672111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9796374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68503600-68519800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68511600-68518400	Weak transcription	Fetal Lung	lung
3	chr14:68514600-68518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:68514800-68518200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:68514800-68522600	Weak transcription	HSMM	muscle
6	chr14:68514800-68527000	Weak transcription	Ovary	ovary
7	chr14:68515600-68518000	Weak transcription	Primary B cells from cord blood	blood

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