Variant report

Variant	rs60562079
Chromosome Location	chr14:68569025-68569026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68559348..68562208-chr14:68567307..68571159,3	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10133770	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10134124	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134320	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134664	0.86[ASN][1000 genomes]
rs10135046	0.86[ASN][1000 genomes]
rs10135256	0.86[ASN][1000 genomes]
rs10137330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10140465	0.88[ASN][1000 genomes]
rs10141018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10144224	0.86[ASN][1000 genomes]
rs10145197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145820	0.84[ASN][1000 genomes]
rs10147311	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10148713	1.00[EUR][1000 genomes]
rs10149801	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150584	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10150789	0.88[ASN][1000 genomes]
rs10873211	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10873212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158720	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158721	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11844842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11847339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851597	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851991	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437043	0.83[ASN][1000 genomes]
rs17104880	0.86[ASN][1000 genomes]
rs17104900	0.88[ASN][1000 genomes]
rs17104908	0.81[ASN][1000 genomes]
rs17104917	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104947	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105001	0.90[ASN][1000 genomes]
rs1951411	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057361	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2767364	1.00[EUR][1000 genomes]
rs28372014	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28448732	0.84[ASN][1000 genomes]
rs28716846	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60841871	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7145089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7148799	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156822	0.83[ASN][1000 genomes]
rs7157152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7161070	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73286292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359083	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007347	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011367	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8012493	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8013061	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018029	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68566400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:68566600-68570800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:68567400-68569200	ZNF genes & repeats	Fetal Muscle Leg	muscle
4	chr14:68567400-68569200	ZNF genes & repeats	Thymus	Thymus
5	chr14:68567400-68569200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr14:68567600-68569800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr14:68567600-68570000	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr14:68567800-68569200	ZNF genes & repeats	Dnd41	blood
9	chr14:68568000-68569200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:68568000-68569200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:68568200-68569400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr14:68568400-68569200	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr14:68568400-68569200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:68568400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr14:68568600-68569200	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr14:68568800-68569200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:68568800-68569200	ZNF genes & repeats	Osteobl	bone
18	chr14:68568800-68569400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:68568800-68570000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:68568800-68571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:68569000-68569400	Weak transcription	Aorta	Aorta
22	chr14:68569000-68569600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr14:68569000-68570400	Weak transcription	Fetal Lung	lung
24	chr14:68569000-68571200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:68569000-68572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
27	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links