Variant report

Variant	rs7148799
Chromosome Location	chr14:68583628-68583629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68575697..68577939-chr14:68581509..68583841,2	MCF-7	breast:

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.89[JPT][hapmap]
rs10132022	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10132711	0.84[JPT][hapmap]
rs10132828	0.84[JPT][hapmap]
rs10133262	0.93[CHD][hapmap]
rs10133770	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134320	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134664	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10135046	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10135256	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10135316	0.90[JPT][hapmap]
rs10135925	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs10137330	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	1.00[JPT][hapmap]
rs10137712	0.90[JPT][hapmap]
rs10139236	0.81[JPT][hapmap]
rs10139386	0.81[JPT][hapmap]
rs10140465	0.84[ASN][1000 genomes]
rs10141018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10143219	0.90[JPT][hapmap]
rs10143455	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10143895	0.90[JPT][hapmap]
rs10144128	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs10144224	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10145197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145820	0.84[ASN][1000 genomes]
rs10146719	0.90[JPT][hapmap]
rs10146766	0.90[JPT][hapmap]
rs10146831	0.86[JPT][hapmap]
rs10147311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10147569	0.90[JPT][hapmap]
rs10148713	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149801	0.88[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10150584	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10150789	0.84[ASN][1000 genomes]
rs10151123	0.90[JPT][hapmap]
rs10151317	0.90[JPT][hapmap]
rs10450891	0.89[JPT][hapmap]
rs1080958	0.81[JPT][hapmap]
rs10873211	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873212	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs11158719	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11158720	0.84[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158721	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11623467	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11844842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846344	0.93[CHD][hapmap]
rs11847339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11849196	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850191	0.93[CHD][hapmap]
rs11851597	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851991	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12431697	0.93[CHD][hapmap]
rs12437178	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs1548264	0.81[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104774	0.90[JPT][hapmap]
rs17104783	0.86[JPT][hapmap]
rs17104786	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs17104793	0.89[JPT][hapmap]
rs17104796	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs17104799	0.89[JPT][hapmap]
rs17104823	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs17104824	0.90[JPT][hapmap]
rs17104827	0.90[JPT][hapmap]
rs17104829	0.90[JPT][hapmap]
rs17104862	1.00[JPT][hapmap]
rs17104863	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17104880	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104889	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs17104900	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17104908	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs17104917	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105001	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1950766	0.90[JPT][hapmap]
rs1951411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2180537	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs2208596	0.81[JPT][hapmap]
rs2588832	0.93[CHD][hapmap]
rs2588833	0.93[CHD][hapmap]
rs2767364	1.00[EUR][1000 genomes]
rs2767366	0.93[CHD][hapmap]
rs28372014	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28448732	0.84[ASN][1000 genomes]
rs28716846	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372143	0.93[CHD][hapmap]
rs431649	0.93[CHD][hapmap]
rs4902536	0.93[CHD][hapmap]
rs4902538	0.93[CHD][hapmap]
rs4902548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60562079	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60841871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.89[JPT][hapmap]
rs6573805	0.81[JPT][hapmap]
rs6573815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7145089	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147296	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs7147522	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147935	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149343	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149460	0.90[JPT][hapmap]
rs7150168	0.81[JPT][hapmap]
rs7150716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153978	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154646	0.93[CHD][hapmap]
rs7154725	0.90[JPT][hapmap]
rs7155152	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7157152	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.90[JPT][hapmap]
rs7157720	0.90[JPT][hapmap]
rs7160068	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161070	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73286292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359083	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8007347	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008413	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008791	1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs8011367	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs8015741	0.90[JPT][hapmap]
rs8018029	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8020512	0.90[JPT][hapmap]
rs8020795	0.92[CHD][hapmap];0.81[JPT][hapmap]
rs957930	1.00[JPT][hapmap]
rs9652362	0.90[JPT][hapmap]
rs9652363	0.90[JPT][hapmap]
rs9652364	0.90[JPT][hapmap]
rs9672111	1.00[JPT][hapmap]
rs9796374	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68576400-68592000	Weak transcription	Psoas Muscle	Psoas
3	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:68578800-68584200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:68578800-68590800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:68579000-68584200	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:68579600-68585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:68580800-68585400	Weak transcription	Fetal Lung	lung
10	chr14:68581000-68586800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:68583200-68583800	Enhancers	Fetal Intestine Large	intestine
12	chr14:68583600-68584400	Enhancers	A549	lung
13	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach

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