Variant report

Variant	rs2767364
Chromosome Location	chr14:68609708-68609709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68604504..68610375-chr14:68709920..68717829,10	MCF-7	breast:
2	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
3	chr14:68608519..68611286-chr14:68675156..68679124,3	MCF-7	breast:
4	chr14:68607701..68609708-chr14:69282854..69284739,2	MCF-7	breast:
5	chr14:68604583..68613347-chr14:69257128..69263457,24	MCF-7	breast:
6	chr14:68605985..68611095-chr14:68698031..68701146,7	MCF-7	breast:
7	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
8	chr14:68601301..68602871-chr14:68607372..68610107,2	MCF-7	breast:
9	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
10	chr14:68604998..68610062-chr14:68640494..68644617,7	MCF-7	breast:
11	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10133770	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10134124	1.00[EUR][1000 genomes]
rs10134320	1.00[EUR][1000 genomes]
rs10137330	1.00[EUR][1000 genomes]
rs10141018	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10145197	1.00[EUR][1000 genomes]
rs10147311	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10148713	1.00[EUR][1000 genomes]
rs10149801	1.00[EUR][1000 genomes]
rs10150584	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10873211	1.00[EUR][1000 genomes]
rs10873212	1.00[EUR][1000 genomes]
rs11158720	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158721	1.00[EUR][1000 genomes]
rs11844842	1.00[EUR][1000 genomes]
rs11847339	1.00[EUR][1000 genomes]
rs11849196	1.00[EUR][1000 genomes]
rs11851597	1.00[EUR][1000 genomes]
rs11851991	1.00[EUR][1000 genomes]
rs17104917	1.00[EUR][1000 genomes]
rs17104947	1.00[EUR][1000 genomes]
rs17104953	1.00[EUR][1000 genomes]
rs17104992	1.00[EUR][1000 genomes]
rs1951411	1.00[EUR][1000 genomes]
rs2057361	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28372014	1.00[EUR][1000 genomes]
rs28716846	1.00[EUR][1000 genomes]
rs34370899	1.00[EUR][1000 genomes]
rs4902548	1.00[EUR][1000 genomes]
rs4902550	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60562079	1.00[EUR][1000 genomes]
rs60841871	1.00[EUR][1000 genomes]
rs6573815	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6573816	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7145089	1.00[EUR][1000 genomes]
rs7147522	1.00[EUR][1000 genomes]
rs7147935	1.00[EUR][1000 genomes]
rs7148799	1.00[EUR][1000 genomes]
rs7149343	1.00[EUR][1000 genomes]
rs7150716	1.00[EUR][1000 genomes]
rs7153978	1.00[EUR][1000 genomes]
rs7154228	1.00[EUR][1000 genomes]
rs7154645	1.00[EUR][1000 genomes]
rs7155152	1.00[EUR][1000 genomes]
rs7157152	1.00[EUR][1000 genomes]
rs7160068	1.00[EUR][1000 genomes]
rs7161070	1.00[EUR][1000 genomes]
rs73286292	1.00[EUR][1000 genomes]
rs7359083	1.00[EUR][1000 genomes]
rs8007347	1.00[EUR][1000 genomes]
rs8008413	1.00[EUR][1000 genomes]
rs8011367	1.00[EUR][1000 genomes]
rs8012493	1.00[EUR][1000 genomes]
rs8013061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68601800-68613600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:68601800-68614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68601800-68614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:68601800-68615600	Enhancers	HMEC	breast
5	chr14:68602400-68610200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:68603800-68611400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:68603800-68612400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:68603800-68612800	Enhancers	Fetal Intestine Large	intestine
9	chr14:68603800-68614000	Enhancers	Fetal Intestine Small	intestine
10	chr14:68603800-68614400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:68603800-68614600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:68603800-68614800	Enhancers	HSMM	muscle
13	chr14:68604000-68611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:68604200-68614800	Enhancers	NHLF	lung
15	chr14:68604400-68609800	Weak transcription	Brain Angular Gyrus	brain
16	chr14:68604400-68613200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:68604800-68609800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:68604800-68613000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:68605000-68609800	Weak transcription	Placenta	Placenta
20	chr14:68605000-68614800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:68605200-68610200	Weak transcription	Colonic Mucosa	Colon
22	chr14:68605600-68611800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr14:68605800-68613800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:68606200-68610400	Enhancers	Rectal Smooth Muscle	rectum
25	chr14:68606200-68613200	Enhancers	Osteobl	bone
26	chr14:68606200-68614000	Enhancers	Fetal Muscle Leg	muscle
27	chr14:68606400-68613400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:68606800-68610200	Weak transcription	Esophagus	oesophagus
29	chr14:68606800-68610400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:68606800-68614800	Enhancers	NHDF-Ad	bronchial
31	chr14:68607000-68610000	Weak transcription	Brain Germinal Matrix	brain
32	chr14:68607000-68610400	Weak transcription	Gastric	stomach
33	chr14:68607200-68609800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:68607200-68610400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:68607200-68610400	Weak transcription	Aorta	Aorta
36	chr14:68607200-68623600	Weak transcription	Ovary	ovary
37	chr14:68607400-68609800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:68607400-68609800	Weak transcription	HepG2	liver
39	chr14:68607400-68610000	Weak transcription	Left Ventricle	heart
40	chr14:68607600-68609800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr14:68607600-68610000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:68607600-68610200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:68607600-68610200	Weak transcription	HUVEC	blood vessel
44	chr14:68607600-68611400	Enhancers	Hela-S3	cervix
45	chr14:68607600-68615000	Enhancers	NHEK	skin
46	chr14:68607800-68609800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:68607800-68609800	Weak transcription	Fetal Stomach	stomach
48	chr14:68607800-68610200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr14:68607800-68616600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:68608400-68609800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links