Variant report

Variant	rs28716846
Chromosome Location	chr14:68589681-68589682
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10133770	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10134124	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10134320	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10134664	0.92[ASN][1000 genomes]
rs10135046	0.92[ASN][1000 genomes]
rs10135256	0.92[ASN][1000 genomes]
rs10137330	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10140465	0.90[ASN][1000 genomes]
rs10141018	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10144224	0.92[ASN][1000 genomes]
rs10145197	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145820	0.89[ASN][1000 genomes]
rs10147311	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10148713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149801	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10150584	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10150789	0.90[ASN][1000 genomes]
rs10873211	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10873212	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158721	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11844842	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11847339	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11849196	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11851597	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11851991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104880	0.92[ASN][1000 genomes]
rs17104900	0.90[ASN][1000 genomes]
rs17104917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104947	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104953	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17104992	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17105001	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1951411	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767364	1.00[EUR][1000 genomes]
rs28372014	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28448732	0.89[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902548	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902550	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60562079	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60841871	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573815	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573816	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7145089	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147522	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147935	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7148799	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149343	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150716	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7153978	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154228	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154645	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7155152	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7157152	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160068	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7161070	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286292	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7359083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8007347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8011367	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8012493	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8013061	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8018029	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68576400-68592000	Weak transcription	Psoas Muscle	Psoas
3	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:68578800-68590800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach
7	chr14:68585800-68591800	Weak transcription	Fetal Heart	heart
8	chr14:68588200-68592000	Weak transcription	Fetal Brain Male	brain
9	chr14:68588600-68593000	Weak transcription	Duodenum Mucosa	Duodenum

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