Variant report

Variant	rs10150789
Chromosome Location	chr14:68536052-68536053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68524998..68527629-chr14:68533348..68536338,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10130997	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132711	0.91[AFR][1000 genomes]
rs10134124	0.80[ASN][1000 genomes]
rs10134320	0.80[ASN][1000 genomes]
rs10134664	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135046	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10137330	0.84[ASN][1000 genomes]
rs10137457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137712	0.81[ASN][1000 genomes]
rs10138719	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140465	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10142285	0.91[AFR][1000 genomes]
rs10143895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145197	0.84[ASN][1000 genomes]
rs10145820	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10146719	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146766	0.89[AFR][1000 genomes]
rs10146831	0.89[AFR][1000 genomes]
rs10149801	0.80[ASN][1000 genomes]
rs10150330	0.89[AFR][1000 genomes]
rs10150584	0.84[ASN][1000 genomes]
rs10151123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10873211	0.84[ASN][1000 genomes]
rs10873212	0.84[ASN][1000 genomes]
rs11158710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11158720	0.92[ASN][1000 genomes]
rs11158721	0.84[ASN][1000 genomes]
rs11844842	0.84[ASN][1000 genomes]
rs11847339	0.88[ASN][1000 genomes]
rs11849196	0.84[ASN][1000 genomes]
rs11851597	0.88[ASN][1000 genomes]
rs11851991	0.94[ASN][1000 genomes]
rs17104774	0.87[AFR][1000 genomes]
rs17104783	0.89[AFR][1000 genomes]
rs17104786	0.89[AFR][1000 genomes]
rs17104824	0.91[AFR][1000 genomes]
rs17104829	0.91[AFR][1000 genomes]
rs17104862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17104863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17104880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104917	0.94[ASN][1000 genomes]
rs17104947	0.84[ASN][1000 genomes]
rs17104953	0.84[ASN][1000 genomes]
rs17104992	0.84[ASN][1000 genomes]
rs17105001	0.90[ASN][1000 genomes]
rs1951411	0.84[ASN][1000 genomes]
rs2057361	0.92[ASN][1000 genomes]
rs2180537	0.87[AFR][1000 genomes]
rs28372014	0.81[ASN][1000 genomes]
rs28434770	0.87[AFR][1000 genomes]
rs28448732	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28516665	0.89[AFR][1000 genomes]
rs28716846	0.90[ASN][1000 genomes]
rs28757308	0.89[AFR][1000 genomes]
rs28816808	0.89[AFR][1000 genomes]
rs28869007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34370899	0.84[ASN][1000 genomes]
rs4902534	0.87[AFR][1000 genomes]
rs4902541	0.91[AFR][1000 genomes]
rs4902548	0.88[ASN][1000 genomes]
rs60562079	0.88[ASN][1000 genomes]
rs60841871	0.84[ASN][1000 genomes]
rs6573802	0.86[AFR][1000 genomes]
rs6573806	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7140987	0.91[AFR][1000 genomes]
rs7145089	0.88[ASN][1000 genomes]
rs7147296	0.87[AFR][1000 genomes]
rs7147522	0.84[ASN][1000 genomes]
rs7147935	0.80[ASN][1000 genomes]
rs7148799	0.84[ASN][1000 genomes]
rs7149343	0.88[ASN][1000 genomes]
rs7149460	0.89[AFR][1000 genomes]
rs7150716	0.84[ASN][1000 genomes]
rs7153470	0.89[AFR][1000 genomes]
rs7153978	0.88[ASN][1000 genomes]
rs7154228	0.88[ASN][1000 genomes]
rs7154645	0.88[ASN][1000 genomes]
rs7154725	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155152	0.88[ASN][1000 genomes]
rs7157152	0.84[ASN][1000 genomes]
rs7157550	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157720	0.89[AFR][1000 genomes]
rs7160068	0.84[ASN][1000 genomes]
rs7161070	0.90[ASN][1000 genomes]
rs73286292	0.84[ASN][1000 genomes]
rs7359083	0.94[ASN][1000 genomes]
rs8003181	0.84[AFR][1000 genomes]
rs8007347	0.90[ASN][1000 genomes]
rs8008413	0.88[ASN][1000 genomes]
rs8011367	0.84[ASN][1000 genomes]
rs8012493	0.80[ASN][1000 genomes]
rs8013061	0.84[ASN][1000 genomes]
rs8014844	0.89[AFR][1000 genomes]
rs8015741	0.88[AFR][1000 genomes]
rs8018029	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs957930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652364	0.89[AFR][1000 genomes]
rs9672111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68536200	Weak transcription	Gastric	stomach
2	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
3	chr14:68532400-68552400	Weak transcription	Ovary	ovary
4	chr14:68534600-68536200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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