Variant report

Variant	rs17104917
Chromosome Location	chr14:68571584-68571585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
2	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
3	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
4	chr14:68569512..68572428-chr14:68574318..68576460,3	MCF-7	breast:
5	chr14:68570562..68573394-chr14:68599517..68602198,2	MCF-7	breast:

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.89[JPT][hapmap]
rs10132022	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10132711	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10132828	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10133262	0.93[CHD][hapmap]
rs10133770	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10134124	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10134320	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10134664	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135046	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135256	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10135316	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10135925	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs10137330	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10137457	1.00[JPT][hapmap]
rs10137712	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10139236	0.81[JPT][hapmap]
rs10139386	0.81[JPT][hapmap]
rs10140465	0.94[ASN][1000 genomes]
rs10141018	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10143219	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10143455	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10143895	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10144128	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs10144224	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10145197	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10145820	0.89[ASN][1000 genomes]
rs10146719	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10146766	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10146831	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10147311	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10147569	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10148713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149801	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10150584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10150789	0.94[ASN][1000 genomes]
rs10151123	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10151317	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10450891	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1080958	0.81[JPT][hapmap]
rs10873211	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10873212	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158710	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs11158719	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11158720	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158721	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11623467	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11844842	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11846344	0.93[CHD][hapmap]
rs11847339	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11849196	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11850191	0.93[CHD][hapmap]
rs11851597	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11851991	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431697	0.93[CHD][hapmap]
rs12437178	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs1548264	0.81[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104774	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104783	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17104786	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs17104793	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs17104796	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs17104799	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs17104823	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs17104824	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104827	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104829	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs17104862	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17104863	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17104880	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104889	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs17104900	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17104908	0.86[CHD][hapmap];0.81[JPT][hapmap]
rs17104947	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104953	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104992	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17105001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1950766	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1951411	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1980654	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2180537	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs2208596	0.81[JPT][hapmap]
rs2588832	0.93[CHD][hapmap]
rs2588833	0.93[CHD][hapmap]
rs2767364	1.00[EUR][1000 genomes]
rs2767366	0.93[CHD][hapmap]
rs28372014	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28448732	0.89[ASN][1000 genomes]
rs28716846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372143	0.93[CHD][hapmap]
rs431649	0.93[CHD][hapmap]
rs4902536	0.93[CHD][hapmap]
rs4902538	0.93[CHD][hapmap]
rs4902548	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902550	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60562079	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60841871	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573802	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs6573805	0.81[JPT][hapmap]
rs6573815	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6573816	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7145089	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147296	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs7147522	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147935	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7148799	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7149343	0.92[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149460	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7150168	0.81[JPT][hapmap]
rs7150716	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153978	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154228	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154645	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154646	0.93[CHD][hapmap]
rs7154725	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7155152	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7157152	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7157550	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7157720	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7160068	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7161070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73286292	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359083	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006175	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8007347	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008791	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs8011367	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8012493	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8013061	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8014000	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs8015741	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8018029	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8020512	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8020795	0.92[CHD][hapmap];0.81[JPT][hapmap]
rs957930	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9652362	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs9652363	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs9652364	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs9672111	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9796374	0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
3	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:68569600-68574000	Enhancers	Colon Smooth Muscle	Colon
9	chr14:68570000-68572400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:68570200-68572800	Enhancers	Fetal Heart	heart
11	chr14:68570400-68571600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:68570400-68572000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:68570400-68572000	Enhancers	NH-A	brain
14	chr14:68570400-68573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:68570600-68571600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr14:68570600-68571600	Enhancers	Fetal Kidney	kidney
17	chr14:68570600-68571800	Enhancers	Osteobl	bone
18	chr14:68570600-68572000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:68570600-68572000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:68570600-68572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:68570600-68572000	Enhancers	HSMMtube	muscle
22	chr14:68570600-68572000	Enhancers	NHLF	lung
23	chr14:68570600-68573400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:68570600-68573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr14:68570600-68573800	Enhancers	NHEK	skin
26	chr14:68570800-68572200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:68570800-68572600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:68570800-68573800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr14:68571000-68571600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr14:68571000-68571600	Enhancers	Fetal Intestine Small	intestine
31	chr14:68571000-68571800	Enhancers	NHDF-Ad	bronchial
32	chr14:68571000-68572200	Enhancers	HMEC	breast
33	chr14:68571000-68574000	Enhancers	Fetal Lung	lung
34	chr14:68571200-68571600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:68571200-68571600	Enhancers	A549	lung
36	chr14:68571200-68571800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:68571200-68571800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:68571200-68572200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:68571200-68572200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr14:68571200-68573600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr14:68571400-68571600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:68571400-68571800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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