Variant report

Variant	rs17104900
Chromosome Location	chr14:68551243-68551244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68550358..68553138-chr14:68762603..68764718,2	MCF-7	breast:
2	chr14:68542242..68544214-chr14:68550755..68552460,2	MCF-7	breast:
3	chr14:68546000..68548241-chr14:68549428..68552424,3	MCF-7	breast:
4	chr14:68549897..68552411-chr14:68713293..68716629,3	MCF-7	breast:
5	chr14:68549804..68551965-chr14:68607068..68608947,2	MCF-7	breast:
6	chr14:68549698..68551582-chr14:68946778..68949306,2	MCF-7	breast:
7	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
8	chr14:68549312..68551959-chr14:68656938..68660487,4	MCF-7	breast:
9	chr14:68550172..68552587-chr14:68933806..68935725,2	MCF-7	breast:
10	chr14:68549588..68551587-chr14:68658498..68660116,2	MCF-7	breast:

No data

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.90[JPT][hapmap]
rs10130997	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132022	0.81[JPT][hapmap]
rs10132711	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes]
rs10132828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs10133485	1.00[CEU][hapmap]
rs10133652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap]
rs10134124	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10134320	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10134664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10135316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs10135925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs10137330	0.84[ASN][1000 genomes]
rs10137457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10138719	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10139236	0.82[JPT][hapmap]
rs10139386	0.82[JPT][hapmap]
rs10140465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141018	1.00[JPT][hapmap]
rs10142285	0.90[AFR][1000 genomes]
rs10143219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap]
rs10143455	0.81[JPT][hapmap]
rs10143895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs10144224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145197	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10145820	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10145884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs10146719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10146831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs10147311	1.00[JPT][hapmap]
rs10147569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10148893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs10149801	0.80[ASN][1000 genomes]
rs10150330	0.88[AFR][1000 genomes]
rs10150584	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10150789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs10450891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap]
rs1080958	0.82[JPT][hapmap]
rs10873211	0.84[ASN][1000 genomes]
rs10873212	0.84[ASN][1000 genomes]
rs11158710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11158719	0.81[JPT][hapmap]
rs11158720	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11158721	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1118397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.81[JPT][hapmap]
rs11623467	0.81[JPT][hapmap]
rs11844842	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11847339	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11849196	0.84[ASN][1000 genomes]
rs11851597	0.88[ASN][1000 genomes]
rs11851991	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12437178	0.81[JPT][hapmap]
rs1548264	0.82[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs17104783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17104786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17104793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs17104796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap]
rs17104799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs17104823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17104824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17104827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs17104829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17104862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17104863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17104880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104889	0.81[JPT][hapmap]
rs17104908	0.81[JPT][hapmap]
rs17104917	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17104947	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17104953	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17104992	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17105001	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17783202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap]
rs1950766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1951411	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1980654	0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2180537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2208596	0.81[JPT][hapmap]
rs28372014	0.81[ASN][1000 genomes]
rs28434770	0.86[AFR][1000 genomes]
rs28448732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28516665	0.88[AFR][1000 genomes]
rs28716846	0.90[ASN][1000 genomes]
rs28757308	0.88[AFR][1000 genomes]
rs28816808	0.88[AFR][1000 genomes]
rs28869007	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34370899	0.84[ASN][1000 genomes]
rs4899229	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs4902530	1.00[CEU][hapmap]
rs4902531	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs4902534	0.86[AFR][1000 genomes]
rs4902541	0.90[AFR][1000 genomes]
rs4902548	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4902550	1.00[JPT][hapmap]
rs60562079	0.88[ASN][1000 genomes]
rs60841871	0.84[ASN][1000 genomes]
rs6573802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6573805	0.81[JPT][hapmap]
rs6573806	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6573815	1.00[JPT][hapmap]
rs6573816	1.00[JPT][hapmap]
rs7140987	0.90[AFR][1000 genomes]
rs7145089	0.88[ASN][1000 genomes]
rs7147296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7147522	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7147935	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7148799	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7149343	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7149460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7150168	0.81[JPT][hapmap]
rs7150716	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7153470	0.88[AFR][1000 genomes]
rs7153978	0.88[ASN][1000 genomes]
rs7154228	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7154645	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7154725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155152	0.88[ASN][1000 genomes]
rs7157152	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7157550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7157720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7158544	0.81[JPT][hapmap]
rs7160068	0.84[ASN][1000 genomes]
rs7161070	0.90[ASN][1000 genomes]
rs73286292	0.84[ASN][1000 genomes]
rs7359083	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8003181	0.83[AFR][1000 genomes]
rs8006175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap]
rs8007347	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8008413	0.88[ASN][1000 genomes]
rs8008791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs8011367	0.84[ASN][1000 genomes]
rs8012493	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs8013061	0.84[ASN][1000 genomes]
rs8014000	0.81[JPT][hapmap]
rs8014844	0.88[AFR][1000 genomes]
rs8015741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs8018029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs8020795	0.81[JPT][hapmap]
rs957930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs9652363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap]
rs9652364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9672111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9796374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68552400	Weak transcription	Ovary	ovary
2	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:68542600-68552400	Weak transcription	Lung	lung
4	chr14:68542800-68552000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:68542800-68552400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:68544000-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:68545800-68555800	Weak transcription	Small Intestine	intestine
9	chr14:68546200-68554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:68547000-68552400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:68547400-68551400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:68547400-68551800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:68547400-68552200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:68547400-68552200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:68547400-68555000	Weak transcription	Psoas Muscle	Psoas
17	chr14:68547600-68554000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:68547800-68551800	Weak transcription	HepG2	liver
19	chr14:68548400-68552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:68548400-68552800	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:68548600-68551600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:68548600-68552200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:68548600-68552600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:68549200-68554000	Enhancers	Fetal Lung	lung
25	chr14:68549200-68555400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:68549600-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:68550000-68554800	Weak transcription	NHEK	skin
28	chr14:68550200-68555000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:68550600-68551400	Enhancers	Fetal Kidney	kidney
30	chr14:68550600-68551600	Enhancers	Fetal Intestine Small	intestine
31	chr14:68550800-68553000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:68551000-68551400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:68551000-68551400	Enhancers	Colonic Mucosa	Colon
34	chr14:68551000-68551400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr14:68551000-68552600	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr14:68551000-68552800	Enhancers	A549	lung
37	chr14:68551200-68551400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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