Variant report

Variant	rs28372014
Chromosome Location	chr14:68591369-68591370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:
2	chr14:68590213..68592224-chr14:68596634..68599036,2	MCF-7	breast:
3	chr14:68589896..68592803-chr14:68593346..68594883,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258837	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10133770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10134124	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134320	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134664	0.83[ASN][1000 genomes]
rs10135046	0.83[ASN][1000 genomes]
rs10135256	0.83[ASN][1000 genomes]
rs10137330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10140465	0.81[ASN][1000 genomes]
rs10141018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10144224	0.83[ASN][1000 genomes]
rs10145197	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145820	0.81[ASN][1000 genomes]
rs10147311	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10148713	1.00[EUR][1000 genomes]
rs10149801	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150584	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10150789	0.81[ASN][1000 genomes]
rs10873211	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10873212	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158720	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158721	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11844842	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11847339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849196	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851597	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11851991	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104880	0.83[ASN][1000 genomes]
rs17104900	0.81[ASN][1000 genomes]
rs17104917	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104953	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17104992	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105001	0.90[ASN][1000 genomes]
rs1951411	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057361	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2767364	1.00[EUR][1000 genomes]
rs28448732	0.81[ASN][1000 genomes]
rs28716846	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902550	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60562079	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60841871	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573816	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7145089	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7147522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7148799	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149343	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150716	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154645	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7157152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7161070	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73286292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7359083	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8007347	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008413	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8011367	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8012493	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8013061	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8018029	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68576400-68592000	Weak transcription	Psoas Muscle	Psoas
3	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach
6	chr14:68585800-68591800	Weak transcription	Fetal Heart	heart
7	chr14:68588200-68592000	Weak transcription	Fetal Brain Male	brain
8	chr14:68588600-68593000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:68589800-68591600	Weak transcription	A549	lung
10	chr14:68590200-68591600	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:68590600-68593400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:68590800-68592400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr14:68591000-68592000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:68591000-68592600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:68591000-68593000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:68591000-68593400	Enhancers	Fetal Kidney	kidney
17	chr14:68591200-68592800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:68591200-68595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links